2013 Winter Project Week

Back to Project Events, Events

Back to Project Events, AHM_2013, Events

Project Week is a hands on activity -- programming using the open source NA-MIC Kit, algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.

Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all na-mic members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.

The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.

A summary of all past NA-MIC Project Events is available here.

Dates.Venue.Registration

Please click here for Dates, Venue, and Registration for this event.

AGENDA and Project List

Please:

• Click here for the agenda for AHM 2013 and Project Week.
• Click here to jump to Project list

Background and Preparation

A summary of all past NA-MIC Project Events is available here.

Please make sure that you are on the na-mic-project-week mailing list

Projects

• Template for project pages

TBI

• 4D DTI tractography in Slicer for TBI (Bo Wang, Andrei Irimia, Micah Chambers, Jack Van Horn, Bo Wang, Marcel Prastawa, Guido Gerig)
• Clinically oriented TBI connectivity analysis in Slicer (Andrei Irimia, Bo Wang, Micah Chambers, Jack Van Horn, Marcel Prastawa, Guido Gerig)
• Geometric metamorphosis for TBI (Danielle Pace, Stephen Aylward, Andrei Irimia, Micah Chambers)

Atrial Fibrillation

• Scar Identification (LiangJia Zhu, Yi Gao, Josh Cates, Rob MacLeod, Allen Tannenbaum)
• SLICER MODULE: PV Antrum Cut Filter (Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod)
• SLICER MODULE: Automated LA Segmentation by Gopal (Gopal Veni, Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod)
• SLICER WORKFLOW: Practical Manual LA Segmentation in Slicer (Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod)
• PROJECT PLANNING: Real Time MRI in Slicer with OpenIGT (Alan Morris, Ashvin George, Josh Cates, Rob MacLeod)

Huntington's Disease

• Quality assurance module enhancements (Dave Welch, Hans Johnson)
• Slicer interface to add Python modules to Slicer environment (Dave Welch)
• Fast fiducial registration module (Dave Welch)

Head and Neck Cancer

• Multi atlas-based segmentation (Sharp, Shusharina, Golland)
• Hybrid interactive-automatic registration (Sharp, Shusharina, Pieper)

Prostate Interventions

• BRAINSFit in ITK4: extra functionality and testing for prostate MR registration (Andrey, Hans)
• PkModeling for prostate DCE MRI (Jim, Andrey)

General Image Guided Therapy

• United SlicerIGT extension, repository, website (Tamas Ungi, Junichi Tokuda, Adam Rankin)
• Mobile image overlay augmented reality needle guidance (Adam Rankin, Tamas Ungi)

Radiation Therapy

• SlicerRT: DICOM RT export (Kevin Wang, Greg Sharp, Csaba Pinter)
• SlicerRT: Beam geometry widgets (Csaba Pinter, Greg Sharp)

NA-MIC Kit Internals

• Web-based anatomical teaching framework for mi2b2 (Daniel Haehn, Steve Pieper, Sonia Pujol, Randy Gollub, Rudolph Pienaar, Ellen Grant)
• ITKv4 Default in Superbuild - Issues (Matt McCormick, Luis Ibanez, Hans Johnson, Jc?, Bill Lorensen)
• Slicer4 Markups Module (Nicole Aucoin)
• Slicer4 Color Hierarchies (Nicole Aucoin)
• Slicer4 Patient Hierarchy (Csaba Pinter, Andrey Fedorov?, Nicole Aucoin, Steve Pieper)
• Slicer4 Scalar bar improvements (Kevin Wang, Steve Pieper?, Csaba Pinter)
• Slicer4 CLI Matlab interface (Kevin Wang, Steve Pieper?, Csaba Pinter)
• PET/CT SUV Module for Clinicians (Sonia Pujol, Markus Van Tol, Nicole Aucoin)
• Slicer4 Self Test and [http://slicer-devel.65872.n3.nabble.com/ANN-Oldies-But-Goodies-Volume-Data-tt4026821.html Sample Data Refactor] (Steve Pieper, Jim Miller, Jc, Sankhesh Jhaveri)
• Simplify MRML References - Issue #2727 (Alex Yarmarkovich, Andras Lasso?, Steve Pieper, Julien Finet ?, Sankhesh Jhaveri ?, Jc ?)
• Integration of IPython (Jc, Hans Johnson, Dave Welch, Steve Pieper, Matt McCormick)
• Slicer Debian package (Jc, Dominique Belhachemi ?, Greg Sharp)
• Simplify renderer window mouse interaction - Mailing list thread (Csaba ?, Greg?, Andriy?, Steve, Jc)
• Potential solutions for defining roles and/or attributes for volumes that are preserved when the volume is processed. - Mailing list thread (Andras?, Greg?, Andriy?, Steve, Jc)
• Interactive Registration for Image Guided Therapy (Jim Miller, Steve Pieper, Kunlin Cao)