Difference between revisions of "UKF Tractography in Slicer 4"
From NAMIC Wiki
| Line 19: | Line 19: | ||
* '''High Priority''': | * '''High Priority''': | ||
| − | + | ** Have a working UKFtractography module in Slicer4 extension: | |
| − | + | 1. Change and update the UKFTractography.xml file for receiving a .vtk file as output. | |
| − | + | 2. Setup CTest and ensure its working. | |
| − | + | 3. Verify that the Tractography module works on a test invivo data set | |
a). Verify that the following 4 models work properly. | a). Verify that the following 4 models work properly. | ||
1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water. | 1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water. | ||
| − | + | 4. Design a logo for the extension module. | |
| − | + | 5. Document the module (including utility functions) -- make a wiki page. | |
(Include the References to the appropriate papers and make nice snapshots). | (Include the References to the appropriate papers and make nice snapshots). | ||
| − | + | 6. Add the 2 utility functions to the extension module and verify if they work. | |
* '''Optional''': | * '''Optional''': | ||
Revision as of 21:05, 4 January 2013
Home < UKF Tractography in Slicer 4
Key Investigators
- Ryan Eckbo, BWH, HMS
- Yogesh Rathi, BWH, HMS
- Demian Wassermann, BWH, HMS
- Carl-Fredrik Westin, BWH, HMS
Project Description
Objective
- High Priority:
- Have a working UKFtractography module in Slicer4 extension:
1. Change and update the UKFTractography.xml file for receiving a .vtk file as output. 2. Setup CTest and ensure its working. 3. Verify that the Tractography module works on a test invivo data set
a). Verify that the following 4 models work properly.
1-Tensor, 1-Tensor with Free-water, 2-tensor, 2-tensor with free-water.
4. Design a logo for the extension module. 5. Document the module (including utility functions) -- make a wiki page.
(Include the References to the appropriate papers and make nice snapshots).
6. Add the 2 utility functions to the extension module and verify if they work.
- Optional:
1. Use the VTK library to output the data (.vtp).
- Future Work:
1. Move from boost to ITK multithreading.
