Difference between revisions of "2013 Project Week:CliMatlabInterface"
From NAMIC Wiki
(First draft) |
|||
Line 2: | Line 2: | ||
<gallery> | <gallery> | ||
Image:PW-SLC2013.png|[[2013_Winter_Project_Week#Projects|Projects List]] | Image:PW-SLC2013.png|[[2013_Winter_Project_Week#Projects|Projects List]] | ||
+ | Image:Matlabcommander.png| CLI module utilizing openigtlink to connect matlab server to run a matlab script. | ||
<!--Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.--> | <!--Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.--> | ||
<!--Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.--> | <!--Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.--> | ||
Line 7: | Line 8: | ||
==Key Investigators== | ==Key Investigators== | ||
− | * PMH, | + | * PMH, Toronto: Kevin Wang |
* Isomics: Steve Pieper | * Isomics: Steve Pieper | ||
− | * Queen's: Csaba Pinter | + | * Queen's: Andras Lasso, Csaba Pinter |
Line 23: | Line 24: | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
− | * | + | * The current approach is described in the corresponding SlicerRT ticket. |
+ | * Basically a cli module is used to set up an openigtlink to a matlab server. then the matlab script and any inputs and outputs are transferred using openigtlink. | ||
</div> | </div> | ||
Line 30: | Line 32: | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
− | + | * a very simple cli module that utilizes openigtlink to send over a simple matlab script and receive the result from matlab server is implemented. | |
+ | * A matlab server script that can communicate with cli module using openigtlink protocol is implemented and it is native to matlab so no need to compile mex files. | ||
</div> | </div> |
Revision as of 19:35, 10 January 2013
Home < 2013 Project Week:CliMatlabInterfaceKey Investigators
- PMH, Toronto: Kevin Wang
- Isomics: Steve Pieper
- Queen's: Andras Lasso, Csaba Pinter
Objective
The goal is to discuss the possibilities and the best course of action for the CLI Matlab interface.
Approach, Plan
- The current approach is described in the corresponding SlicerRT ticket.
- Basically a cli module is used to set up an openigtlink to a matlab server. then the matlab script and any inputs and outputs are transferred using openigtlink.
Progress
- a very simple cli module that utilizes openigtlink to send over a simple matlab script and receive the result from matlab server is implemented.
- A matlab server script that can communicate with cli module using openigtlink protocol is implemented and it is native to matlab so no need to compile mex files.
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as changes in the Slicer4 core