Difference between revisions of "2014 Project Week:TBISegmentation"
From NAMIC Wiki
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<h3>Objective</h3> | <h3>Objective</h3> | ||
* Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules. | * Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules. | ||
| − | * Study and gain understanding of the manual process for segmenting TBI | + | * Study and gain understanding of the manual process for segmenting TBI. |
* Test the algorithm with users from USC. | * Test the algorithm with users from USC. | ||
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== Reference == | == Reference == | ||
| − | * [http://www.nitrc.org/projects/parser_4d 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)] | + | * [http://www.nitrc.org/projects/parser_4d 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration) Code Repo] |
* [http://www.cs.utah.edu/~bowang/projects/active4D/4D_Active_Cut.html 4D Active Cut] | * [http://www.cs.utah.edu/~bowang/projects/active4D/4D_Active_Cut.html 4D Active Cut] | ||
* [http://link.springer.com/chapter/10.1007/978-3-319-02126-3_4 Modeling 4D changes in TBI] | * [http://link.springer.com/chapter/10.1007/978-3-319-02126-3_4 Modeling 4D changes in TBI] | ||
Revision as of 14:29, 6 January 2014
Home < 2014 Project Week:TBISegmentation
Interactive process
Key Investigators
- GE: Marcel Prastawa
- Utah: Bo Wang, Guido Gerig
- USC: Andrei Irimia, Jack Van Horn
Project Description
Objective
- Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
- Study and gain understanding of the manual process for segmenting TBI.
- Test the algorithm with users from USC.
Approach, Plan
- Wrap existing code into a Slicer extension.
- Determine approaches for user interaction for semi-automatic segmentation.
- Test and evaluate Slicer modules for TBI processing:
- Intra and inter time points coregistration.
- Initial atlas alignment using affine transformation.
- Skull stripping to obtain initial brain mask.
