Difference between revisions of "2014 Project Week:LAFibrosisVisualizationModule"
From NAMIC Wiki
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* Utah: Salma Bengali, Josh Cates | * Utah: Salma Bengali, Josh Cates | ||
| − | [[File: | + | [[File:LAFIbrosisVis2.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]] |
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
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<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | * The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. We have a preliminary module for visualization of scar / fibrosis, but need to expand with additional color maps. | + | * The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. We have a preliminary module for visualization of scar / fibrosis, but need to expand with additional color maps. We would also like to add the calculation of the percent of scar in the left atrium wall. |
</div> | </div> | ||
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<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | + | # We have discussed with Nicole and have decided to add a custom color map that will be included with our extension. An example of what the wall model will look like is shown above. | |
| + | # The percentage of scar in the wall will be calculated and updated as the user changes the intensity threshold. | ||
</div> | </div> | ||
</div> | </div> | ||
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==Delivery Mechanism== | ==Delivery Mechanism== | ||
| − | This work will be | + | This work will be added to what is already available as a Slicer loadable module. |
==References== | ==References== | ||
*[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP] | *[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP] | ||
Revision as of 02:19, 10 January 2014
Home < 2014 Project Week:LAFibrosisVisualizationModule
Key Investigators
- Utah: Salma Bengali, Josh Cates
File:LAFIbrosisVis2.png
An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.
Objective
- The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. We have a preliminary module for visualization of scar / fibrosis, but need to expand with additional color maps. We would also like to add the calculation of the percent of scar in the left atrium wall.
Approach, Plan
- Build slicer module for visualization of (1) fibrosis and (2) scar with custom color maps
Progress
- We have discussed with Nicole and have decided to add a custom color map that will be included with our extension. An example of what the wall model will look like is shown above.
- The percentage of scar in the wall will be calculated and updated as the user changes the intensity threshold.
Delivery Mechanism
This work will be added to what is already available as a Slicer loadable module.
