Difference between revisions of "Training:OHBM2007 Training Workshop"
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| − | === June 9, 2007*** | + | === June 9, 2007*** This is the day before the official OHBM meeting starts, it is being held in the same venue as the OHBM meeting === |
== Workshop Goals == | == Workshop Goals == | ||
| − | * To | + | * To educate attendees in the fundamentals of Diffusion Tensor Imaging data required to make informed decisions about how to analyze their own DTI data. |
* To provide tutorials on DTI data validation and management (including how to put your image data into NRRD format). | * To provide tutorials on DTI data validation and management (including how to put your image data into NRRD format). | ||
* To provide hands on tutorials in the use of NA-MIC DTI analysis tools (including the Slicer DTI module). | * To provide hands on tutorials in the use of NA-MIC DTI analysis tools (including the Slicer DTI module). | ||
* To establish contact between NA-MIC Tookit experts (users and developers) and basic and clinical researchers in the global neuroimaging community. | * To establish contact between NA-MIC Tookit experts (users and developers) and basic and clinical researchers in the global neuroimaging community. | ||
| − | * To provide complementary material to what is being taught in the OHBM | + | * To provide complementary material to what is being taught in the OHBM Educational courses. |
== Workshop Logistics == | == Workshop Logistics == | ||
| − | * The workshop at the Sheraton Hotel that is hosting the [http://www.humanbrainmapping.org/ OHBM Conference] on the day before the meeting, June | + | * The workshop is being held in the Michigan Room at the Sheraton Hotel that is hosting the [http://www.humanbrainmapping.org/ OHBM Conference] on the day before the meeting, June 9, 2007 in Chicago, IL. |
* We anticipate that approximately 45-50 graduate students, research fellows, junior faculty, research assistants and post-doctoral trainees from among the fields of clinical neuroscience (Psychiatry, Psychology, Neurology) as well as Radiology, and Computer Science will attend. | * We anticipate that approximately 45-50 graduate students, research fellows, junior faculty, research assistants and post-doctoral trainees from among the fields of clinical neuroscience (Psychiatry, Psychology, Neurology) as well as Radiology, and Computer Science will attend. | ||
| Line 17: | Line 17: | ||
* Guido Gerig | * Guido Gerig | ||
| − | |||
* Randy Gollub | * Randy Gollub | ||
* Sonia Pujol | * Sonia Pujol | ||
Revision as of 20:57, 29 March 2007
Home < Training:OHBM2007 Training WorkshopContents
- 1 June 9, 2007*** This is the day before the official OHBM meeting starts, it is being held in the same venue as the OHBM meeting
- 2 Workshop Goals
- 3 Workshop Logistics
- 4 Workshop Faculty
- 5 Preparation for Workshop -- Important Information for all attendees
- 6 Draft Agenda (subject to modifications by Workshop providers, trainees please do not edit this section)
June 9, 2007*** This is the day before the official OHBM meeting starts, it is being held in the same venue as the OHBM meeting
Workshop Goals
- To educate attendees in the fundamentals of Diffusion Tensor Imaging data required to make informed decisions about how to analyze their own DTI data.
- To provide tutorials on DTI data validation and management (including how to put your image data into NRRD format).
- To provide hands on tutorials in the use of NA-MIC DTI analysis tools (including the Slicer DTI module).
- To establish contact between NA-MIC Tookit experts (users and developers) and basic and clinical researchers in the global neuroimaging community.
- To provide complementary material to what is being taught in the OHBM Educational courses.
Workshop Logistics
- The workshop is being held in the Michigan Room at the Sheraton Hotel that is hosting the OHBM Conference on the day before the meeting, June 9, 2007 in Chicago, IL.
- We anticipate that approximately 45-50 graduate students, research fellows, junior faculty, research assistants and post-doctoral trainees from among the fields of clinical neuroscience (Psychiatry, Psychology, Neurology) as well as Radiology, and Computer Science will attend.
Workshop Faculty
- Guido Gerig
- Randy Gollub
- Sonia Pujol
- Steve Pieper
- Katie Hayes
Preparation for Workshop -- Important Information for all attendees
Prerequisites for workshop: Read introductory materials to read in advance.
Please do these installations now.
All attendees are required to complete the following items prior to the workshop. Support will be provided as requested.
- Software Installation:
- Data to Download:
- Introductory tutorial on Loading, Viewing and Saving image data in Slicer
We will be happy to assist anybody who may encounter difficulties in the installation process. As first point of contact, send an email to the NAMIC-developers mailing list which will be closely monitored by NA-MIC Tookit experts. Because we will focus on how to use the application(s) during the workshop not on how to install it, please do the install before you arrive.
Draft Agenda (subject to modifications by Workshop providers, trainees please do not edit this section)
8:00 AM - 5 PM
- 8:00 - 8:30 AM Technical support for installation and trouble shooting
- 8:30 - 8:45 AM Goals of Workshop, Introduction to the NA-MIC Kit, and People-Introductions (Randy Gollub)
- 8:45 - 9:30 AM What is DTI? Introduction to and working with DTI file formats (Sonia Pujol)
- 9:30 - 10:15 DTI data characterization - MR physics (TBD)
- 10:15-10:30 Break
- 10:30 - 11:00 Clinical applications (Guido Gerig/Randy Gollub)
- 11:00 - 12:00 Getting to Know DTI really, really well- tensors, glyphs and more (Ross Whitaker*)
- 12:00 - 1:00 Lunch on own
- 1:00- 2:00 Hands-on Session 1- Slicer Basics: Loading and Viewing data (Sonia Pujol)
- 2:00-3:00 Hands-on Session 2- Slicer DTI tools part 1 (Sonia Pujol)
- 3:00- 3:15 Coffee Break on own
- 3:15 - 4:30 Hands-on Session 3- Slicer DTI tools part 2 (Sonia Pujol)
- 4:30 - 5:00 Users feedback - input from participants about this Workshop
