Difference between revisions of "2015 Winter Project Week:OpenAtlas"
From NAMIC Wiki
MarchingGuy (talk | contribs) |
MarchingGuy (talk | contribs) |
||
| Line 36: | Line 36: | ||
* Edited several structures with [http://slicer.org/ Slicer] to exercise the tools | * Edited several structures with [http://slicer.org/ Slicer] to exercise the tools | ||
* Created a [http://my.cdash.org/index.php?project=OpenAtlas CDash dashboard] | * Created a [http://my.cdash.org/index.php?project=OpenAtlas CDash dashboard] | ||
| + | During Project Week | ||
| + | * Establish an external data mechanism to keep the large binary files out of the repository. This will use the CMake ExternalData techniques developed for VTK and ITK. | ||
| + | * Create a Superbuild option for VTK and ITK that will simplify configuring the required VTK and ITK toolkits. | ||
| + | * Get feedback from potential customers (Ron, Mike Halle, Marianna) | ||
| + | |||
</div> | </div> | ||
</div> | </div> | ||
| + | == Background == | ||
Revision as of 18:17, 24 December 2014
Home < 2015 Winter Project Week:OpenAtlas
Adjacency display for corpus callosum
Difference display for pons
Key Investigators
- Bill Lorensen (Noware)
Project Description
Objective
- Provide tools and techniques to support community-driven anatomy atlas editing and curating.
Approach, Plan
Adapt extreme testing techniques used for software development to manage changes to anatomy atlases.
- Define procedures and policies to support atlas development
- Maintain a github repository to hold
- Image atlases
- Software tools to create models and check atlases for consistency
- Cube and STL models for anatomy structures
- Statistics for anatomy structures
- Displays of changes in strutures
- Displays of structure adjacencies
- Create a CDash dashboard to track changes in the atlases
Progress
Before Project Week
- Pilot project atlas is the Neuro Image Analysis Center's Multi-modality MRI-based Atlas of the Brain
- Established a github repository
- Developed several tools and scripts to process the atlas
- Edited several structures with Slicer to exercise the tools
- Created a CDash dashboard
During Project Week
- Establish an external data mechanism to keep the large binary files out of the repository. This will use the CMake ExternalData techniques developed for VTK and ITK.
- Create a Superbuild option for VTK and ITK that will simplify configuring the required VTK and ITK toolkits.
- Get feedback from potential customers (Ron, Mike Halle, Marianna)
