Difference between revisions of "2015 Winter Project Week COPD Breakout"

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(Created page with '== Introduction== === Project Goals and Funding === === History === === Brief intro to COPD === === Team === == Architecture == == Chest Imaging Platform == === Compone…')
 
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== Chest Imaging Platform ==
+
== Chest Imaging Platform (CIP) ==
 +
[https://github.com/acil-bwh/ChestImagingPlatform.git Git Repository]
 +
=== Code Structure ===
 +
CIP has four main components
 +
*Common: base library
 +
*Utilities: third party libraries
 +
*Command Line Tools: Slicer execution model tools
 +
*cip_python: python library
 +
 
 +
=== Building CIP ===
 +
  git clone https://github.com/acil-bwh/ChestImagingPlatform.git
 +
  mkdir ChestImagingPlatform-build
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  cd ChestImagingPlatoform-build
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  ccmake ../ChestImagingPlatform
  
 
=== Components and Data type ===
 
=== Components and Data type ===
  
=== Code Structure ===
+
* [https://github.com/acil-bwh/ChestImagingPlatform/blob/release/Common/cipChestConventions.h CIP conventions]
 +
 
 +
* Region/Type structure for labelmaps
 +
 
  
 
=== Python and CIP ===
 
=== Python and CIP ===
 +
[https://github.com/acil-bwh/ChestImagingPlatform/tree/release/cip_python cip_python] provides the following functionality:
 +
* Code base for scale-space particles [https://github.com/acil-bwh/ChestImagingPlatform/tree/release/cip_python/particles]
 +
* Phenotype computation framework [https://github.com/acil-bwh/ChestImagingPlatform/tree/release/cip_python/phentoypes]
 +
* Nipype interfaces for CLIS [https://github.com/acil-bwh/ChestImagingPlatform/tree/release/cip_python/nipype]
  
=== Building CIP ===
 
  
 
* Command Line Tools
 
* Command Line Tools

Revision as of 09:26, 6 January 2015

Home < 2015 Winter Project Week COPD Breakout

Introduction

Project Goals and Funding

History

Brief intro to COPD

Team

Architecture

Chest Imaging Platform (CIP)

Git Repository

Code Structure

CIP has four main components

  • Common: base library
  • Utilities: third party libraries
  • Command Line Tools: Slicer execution model tools
  • cip_python: python library

Building CIP

 git clone https://github.com/acil-bwh/ChestImagingPlatform.git
 mkdir ChestImagingPlatform-build
 cd ChestImagingPlatoform-build
 ccmake ../ChestImagingPlatform

Components and Data type

  • Region/Type structure for labelmaps


Python and CIP

cip_python provides the following functionality:

  • Code base for scale-space particles [1]
  • Phenotype computation framework [2]
  • Nipype interfaces for CLIS [3]


  • Command Line Tools

Testing Infrastructure

=== CDash ===

Slicer CIP

MRML Types

Modules Categories

Slicer Module Examples