Shiga 2015 Workshop

Slicer Hands-on Tutorial, March 26, 2015, Shiga University of Medical Science, Japan

Image-Guided Therapy Research using Open Source Free Software 3D Slicer Hands-on Workshop

at Shiga University of Medical Science, on March 26, 2015.

The objective of this workshop is to learn what 3D Slicer is including the community activities and the license and the usage of 3D Slicer in clinical case in the context of Image guided therapy research and medical engineering. Participants will bring their own laptop, install 3D Slicer, and experience image segmentation and non-rigid registration using real clinical data. The lectured will be given by local Japanese expert in 3D Slicer using Japanese version of the tutorial slides. The workshop is followed by live demonstration by a IGT researchers from Brigham and Women's Hospital and Shiga University of Medical Science modifying 3D Slicer to tailor his need.

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Course Organizers

• Atsushi Yamada PhD, Biomedical Innovation Center, Shiga University of Medical Science
• Tohru Tani MD PhD, Biomedical Innovation Center, Shiga University of Medical Science
• Shigeyuki Naka MD PhD, Department of Surgery, Shiga University of Medical Science
• Junichi Tokuda PhD, Department of Radiology, Brigham and Women's Hospital and Harvard Medical School

Organizers

• Biomedical Innovation Center, Shiga University of Medical Science (Japanese) (English)
• National Alliance for Medical Image Computing
• National Center for Image Guided Therapy

Support

• Micron Shiga Inc.（株式会社マイクロン滋賀）

Lecturers

• Soichiro Tani MD, Brigham and Women's Hospital and Harvard Medical School / Shiga University of Medical Science
• Atsushi Yamada PhD, Shiga University of Medical Science
• Junichi Tokuda PhD, Brigham and Women's Hospital and Harvard Medical School
• Koichiro Murakami MD PhD, Shiga University of Medical Science

Date/ Place

• March 26 (Thursday), 2015
• 13:00-16:30
• BioMedical Innovation Center, Shiga University of Medical Science (No.28 in Campus Map) (University Access)

Agenda

• Target audience: Engineers, Surgeon, Radiologists, Physicians, Fellows, and Residents

• 13:00-13:15 Opening remarks by the organizer (Tohru Tani)
• 13:15-13:45 What is 3D Slicer? / How to join Slicer community (Atsushi Yamada, Junichi Tokuda)
• 13:45-14:15 3D Slicerによる前立腺生検サポートの経験 (Soichiro Tani)
• 14:15-15:15 Live demonstration and tutorial of liver registration for CT-guided cryo ablation (Soichiro Tani, Junichi Tokuda)
• 15:15-15:30 Break
• 15:30-16:00 Modifying 3D Slicer to tailor a real-time MR endoscopic navigation system (Atsushi Yamada, Koichiro Murakami)
• 16:00-16:30 Discussion

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Preparation

For this session, please download the following software and datasets:

• Software
  • 3D Slicer4
    • Windows 64 bit
    • Mac OS X
    • Linux
• Datasets
  • Non-rigid registration tutorial Image Datasets
  • Prepared Label Datasets

Past Events in Japan

• 2013 Juntendo University Tokyo
• Iwate 2013 Training
• Tokyo 2013 Training
• Slicer Hands-on Hiroshima 2011
• Slicer-Hands-On Meeting at Tokyo Women’s Medical University in 2010
• Slicer Nagoya June 2009 Workshop
• Slicer Kyushu June 2009 Lecture

Registration

• Free
• To sign up for this event, please send your information (name, organization, type of operating system) by e-mail to Atsushi Yamada, PhD (ayamada@belle.shiga-med.ac.jp).

NA-MIC Events

Back to NA-MIC Events

Participants list

• 1.山田篤史　　バイオメディカル・イノベーションセンター，滋賀医科大学, Mac OS X 10.8.3
• 2.谷徹　　　　バイオメディカル・イノベーションセンター，滋賀医科大学, Windows7 64bit
• 3.仲成幸　　　外科学講座消化器外科，滋賀医科大学，WIndows7 64bit
• 4.徳田淳一　　Department of Radiology, Brigham and Women's Hospital and Harvard Medical School, Mac OS X 10.10.2
• 5.谷総一郎　　Department of Radiology, Brigham and Women's Hospital and Harvard Medical School / バイオメディカル・イノベーションセンター，滋賀医科大学, Mac OS X 10.10.2
• 6.村上耕一郎　外科学講座消化器外科，滋賀医科大学， Mac OS X 10.10.2
• 7.森川茂廣　　基礎看護学講座，滋賀医科大学，Windows7 64bit
• 8.健山智子　　立命館大学
• 9.李迎博　　　立命館大学
• 10.田中彰恵　外科学講座乳腺外科，滋賀医科大学，Mac OS X 10.10.2
• 11.橋本雅之　呼吸器外科，滋賀医科大学，Windows 8