User:Davisb
From NAMIC Wiki
Contents
Current Projects
Rule Based Segmentation
Status summary
itk tests work, fixed vtk wrapper, added mask code to vtk wrapper, currently debugging mask code
How to build module
- build initial copy
- get cvs copy of slicer2
- Scripts/genlib.tcl
- Scripts/cmaker.tcl
- get svn copy of NAMICSandbox
- create a link to the RuleBasedSegmentation module within slicer2
- get cvs copy of slicer2
cd slicer2/Modules ln -s NAMICSandbox/RuleBasedSegmentation/vtkRuleBasedSegmentation vtkRuleBasedSegmentation
- compile slicer2 with RuleBasedSegmentation module
- Scripts/genlib.tcl
- compile slicer2 with RuleBasedSegmentation module
How to add tests (under construction)
- add tests
- test source is already present in the cxx directory
- update CMakeListsLocal.txt in cxx directory---tests are built in module directory
- added a temporary script RunsTests.sh in the Tests directory to run the itk and vtk tests with and without masks
- copied png images to the Tests directory
- "gold standard" images were incorrect; have been rescaled from [0,1] to [0,255]; so much for gold standard ;)
- Run tests
- itk tests succeed
- vtk test without mask succeeds
- vtk test with mask does not succeed
Problems
- [fixed]Build fails---updated name in cmakelists
- [temporary tests added] need to add tests
- itk test
- vtk test
- [now working] vtk test does not work---subtle error in itk code
- [done] need to add mask
- [the dimensios are itk=3, vtk=3, made itk test 3D also] why does vtk test give warning from diffusion filter, but itk test does not?
- [pending]results from vtk test with mask do not work
- need to check everything in
VTK wrapper does not work
- use VTKITK source from vtkITK directory, not seperate copy of files