2008 Summer Project Week:Batch Processing

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Key Investigators

  • Julien Jomier
  • Steve Pieper
  • Marco Ruiz
  • Jim Miller

Objective

Implement tests of batch processing techniques using slicer3 command line modules (EMSegmenter, Registration).

Approach, Plan

BatchMake and GWE are both ready to apply to sample datasets using distributed grid/cluster computing. This week we will flesh out the use cases and run actual jobs.

Also, review the concepts and issues documented on the Large Scale Experiment Brainstorming page.

Progress

Identified separation between GWE and BatchMake

  • GWE: Running Slicer modules on parameter space from within slicer
  • BatchMake: Scripting using Slicer3 modules (outside of Slicer3 GUI) and reporting

BatchMake

  • Implement support to run through GWE
  • Provide reporting tool as slicer execution modules


References

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