UNC ARCTIC Tutorial

ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial

Overview

Following those tutorials, you will be able to perform an individual analysis of regional cortical thickness. In the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes. And in the UNC external modules, you will be able to run the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis step by step.

Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline

Tutorials

• ARCTIC tutorial (end-to-end Slicer3 module to perform automatic regional cortical thickness analysis)‏ [ppt]‏ [pdf]

• UNC Modules tutorial (UNC Slicer3 modules to perform regional cortical thickness analysis step by step) [ppt]‏ [pdf]‏

Software

• Slicer3 http://www.slicer.org/pages/Downloads

• BatchMake‏ http://www.batchmake.org/batchmake/resources/software.html

Tutorial materials

• BatchMake wrapper (ARCTIC_BatchMake_Wrapper_1.0)‏

• Tutorial dataset(ARCTIC_Tutorial_example_1.0)‏

• External modules (ARCTIC_Executables_1.0)

• ‏Pediatric atlas (UNC_Pediatric_Brain_Atlas)‏

People

Cedric Mathieu

Clement Vachet

Martin Styner

Heather Cody Hazlett