Home < 4DUSandEndoscope
Project Page for 4D Ultrasound with Endoscopic Overlay
Collaborators
Jan Gumprecht
- E-Mail: jgumprec(at)bwh.harvard.edu
- Location: Kyushu, Japan
- Timezone: GMT + 9
Jae-Sung Hung, PhD
- E-Mail: hong(at)dem.med.kyushu-u.ac.jp
- Location: Kyushu, Japan
- Timezone: GMT + 9
Nobuhiko Hata, PhD
- E-Mail: hata(at)bwh.harvard.edu
- Location: Boston, USA
- Timezone: GMT - 5
Haiying Liu
- E-Mail: hliu(at)bwh.harvard.edu
- Location: Boston, USA
- Timezone: GMT - 5
Yamada Atsushi, PhD
- E-Mail: yamada.atsushi(at)nitech.ac.jp
- Location: Nagoya, Japan
- Timezone: GMT + 9
Project Description
The goal of this project is to create a new 3D Slicer Module that can overlay patient registered 4D US volumes with endoscopic images.
The Project is divided into four part: 4D Ultrasound Volume Reconstruction, Patient-Image Registration, Endoscope Overlay, and Endoscope Calibration. All four parts will be accessable through a single 3D Slicer Module.
Overall Progress
| Month |
Week # |
Start Date - End Date |
Done |
Date Done
|
|
|
|
Week 34 |
17.08 - 23.08 |
|
|
|
|
|
Week 33 |
10.08 - 16.08 |
|
|
|
|
|
Endoscopic Overlay and Endoscopic Calibration shall be finished |
|
|
| August |
Week 32 |
03.08.09 - 09.08.09 |
|
|
|
|
|
New PC set up |
x |
Thu Jul, 30th
|
|
New PC arrived |
x |
Tue Jul, 28th
|
|
Week 31 |
27.07 - 02.08 |
|
|
|
|
|
Project Page created |
x |
Fri Jul, 24th
|
| July |
Week 30 |
20.07.09 - 26.07.09 |
|
|
General To Do
| Tasks
|
| O |
Fill Project Page with Information
|
| O |
Order new Frame Grabber Card
|
| DONE |
Set Up New Computer
|
| DONE |
Order new PC
|
| DONE |
Create Project Page
|
Details
- The following frame grabber card only provides grayscale images: I-O DATA GV-VCP3R/PCI (video decoder chip CX2388x) [1]
3D Slicer Module
- Responsible: Jan Gumprecht
Details
Progress
| Month |
Week # |
Start Date - End Date |
Done |
Date Done
|
|
|
|
Week 34 |
17.08 - 23.08 |
|
|
|
|
|
Week 33 |
10.08 - 16.08 |
|
|
|
|
|
Second Window works |
x |
Thu, Aug 6th
|
| August |
Week 32 |
03.08.09 - 09.08.09 |
|
|
|
|
|
Created First prototype of module |
x |
Fri, Jul 31st
|
|
Week 31 |
27.07 - 02.08 |
|
|
|
|
| July |
Week 30 |
20.07.09 - 26.07.09 |
|
|
To Do
| Tasks
|
| O |
Close Second window with OS native commands, i.e. click the "X" in the right upper corner
|
| O |
Comprehend Prostate nav module's source code
|
| Done |
Include Second Window source code
|
| DONE |
Create first prototyp of module, i.e. adapt IGTWizard Module
|
4D Ultrasound Volume Reconstruction
- Responsible: Jan Gumprecht
Details
The project is described here: [[2]]
Progress
| Month |
Week # |
Start Date - End Date |
Done |
Date Done
|
|
|
|
Week 34 |
17.08 - 23.08 |
|
|
|
|
|
Week 33 |
10.08 - 16.08 |
|
|
|
|
| August |
Week 32 |
03.08.09 - 09.08.09 |
|
|
|
|
|
Update Calibration and Spacing Handeling |
|
|
|
New Commandline parameter added to grab a test image |
x |
Tue, Jul 30th
|
|
All parameters of the calibration file are now used |
x |
Tue, Jul 28th
|
|
OpenIGTLink is now externally, no local copy within the source code is used anymore |
x |
Mon, Jul 27th
|
|
Week 31 |
27.07 - 02.08 |
|
|
|
|
|
Show demo of the system |
|
|
| July |
Week 30 |
20.07.09 - 26.07.09 |
|
|
To Do
| Tasks
|
| O |
Find Segmentation Fault
|
| O |
Update Handling of Spacing
|
| O |
Update Calibration Part
|
| DONE |
Set up existing Hardware for first demo
|
| DONE |
Update CalibrationFileReader
|
Patient-Image Registration
- Responsible: Jae-Sung Hong
Details
Progress
| Month |
Week # |
Start Date - End Date |
Done |
Date Done
|
|
|
|
Week 34 |
17.08 - 23.08 |
|
|
|
|
|
Week 33 |
10.08 - 16.08 |
|
|
|
|
| August |
Week 32 |
03.08.09 - 09.08.09 |
|
|
|
|
|
Start integration with 4D Ultrasound |
|
|
|
Week 31 |
27.07 - 02.08 |
|
|
|
|
| July |
Week 30 |
20.07.09 - 26.07.09 |
|
|
To Do
Endoscope Overlay
- Responsible: Yamada Atsushi, Haiying Liu
Details
Bug Fixes for the 3D Slicer Module
- There is a bug in OpenCV related to V4L2 devices:
- Here is the bugtrac with information: [[3]]
- Somehow this is related to bttv 878 cards. OpenCV seem not to be able to handle all output of the card correctly
- Here is the fix [[4]]
- Apply the changes of revision 1609 to the file # opencv/src/highgui/cvcap_v4l.cpp
Progress
| Month |
Week # |
Start Date - End Date |
Done |
Date Done
|
|
|
|
Week 34 |
17.08 - 23.08 |
|
|
|
|
|
Week 33 |
10.08 - 16.08 |
|
|
|
|
|
Endoscopic Overlay shall be finished |
|
|
| August |
Week 32 |
03.08.09 - 09.08.09 |
|
|
|
|
|
|
|
|
|
Week 31 |
27.07 - 02.08 |
|
|
|
|
| July |
Week 30 |
20.07.09 - 26.07.09 |
|
|
To Do
| Tasks
|
| O |
Dummy Task
|
| Endoscope overlay
|
Endoscope Calibration
Details
Progress
| Month |
Week # |
Start Date - End Date |
Done |
Date Done
|
|
|
|
Week 34 |
17.08 - 23.08 |
|
|
|
|
|
Week 33 |
10.08 - 16.08 |
|
|
|
|
|
Endoscopic Calibration shall be finished |
|
|
| August |
Week 32 |
03.08.09 - 09.08.09 |
|
|
|
|
|
|
|
|
|
Week 31 |
27.07 - 02.08 |
|
|
|
|
| July |
Week 30 |
20.07.09 - 26.07.09 |
|
|
To Do
