2014 Project Week:TBISegmentation

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  Projects List

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  Interactive process

Key Investigators

• GE: Marcel Prastawa
• Utah: Bo Wang, Guido Gerig
• USC: Andrei Irimia, Jack Van Horn

Project Description

Objective

• Develop a pipeline combining our TBI segmentation algorithm with other Slicer modules.
• Study and gain understanding of the manual process for segmenting TBI
• Test the algorithm with users from USC.

Approach, Plan

• Wrap existing code into a Slicer extension
• Determine approaches for user interaction for semi-automatic segmentation segmentation.
• Test and evaluate Slicer modules for TBI processing:
  • Intra and inter time points coregistration
  • Initial atlas alignment using affine transformation
  • Skull stripping to obtain initial brain mask

Progress

Reference

• 4D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)