2014 Summer Project Week

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Dates: June 23-27, 2014.

Location: MIT, Cambridge, MA.


Agenda

Time Monday, June 23 Tuesday, June 24 Wednesday, June 25 Thursday, June 26 Friday, June 27
Project Presentations NA-MIC Update Day IGT Day Reporting Day
8:30am Breakfast Breakfast Breakfast Breakfast
9am-12pm 10-11:30pm Breakout Session:
DICOM (Steve Pieper)

Grier Room (Left)

9:00-10:30am Tutorial Contest Presentations (Sonia Pujol)
Grier Rooms
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10am-12pm: Breakout Session:
Image-Guided Therapy - Neurosurgery (Alexandra Golby, Tina Kapur)
Star

10am-12pm: Project Progress Updates

12pm Tutorial Contest Winner Announcement Grier Rooms

12pm-1pm Lunch Lunch Lunch Lunch Lunch boxes; Adjourn by 1:30pm
1pm-5:30pm 1-1:05pm: Ron Kikinis: Welcome

Grier Rooms
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1:05-3:30pm: Project Introductions (all Project Leads) Grier Rooms
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3:30-4:30pm Slicer4 Extensions (Jean-Christophe Fillion-Robin)
Grier Room (Left)

1-3pm: Breakout Session:
QIICR (Andrey Fedorov)

Kiva

1-2:30pm: Breakout Session:
Contours (Adam Rankin, Csaba Pinter)

TBD Kiva

1-3pm: Breakout Session:
Image-Guided Therapy - Prostate Interventions (Clare Tempany, Noby Hata)


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5:30pm Adjourn for the day Adjourn for the day Adjourn for the day Adjourn for the day

Background

Project Week is a hands on activity -- programming using the open source NA-MIC Kit, algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.

Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event. Invitations to this call are sent to all NA-MIC members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.

The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical. To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.

A summary of all past NA-MIC Project Events is available here.


Please make sure that you are on the na-mic-project-week mailing list

Projects

TBI

Atrial Fibrillation

Huntington's Disease

Head and Neck Cancer

Slicer4 Extensions

Cardiac

Stroke

Brain Segmentation

Image-Guided Therapy

  • SlicerIGT extension: testing, tutorials, website (Tamas Ungi, Junichi Tokuda)
  • Gestural Point of Care Interface for IGT (Saskia, Franklin, Tobias)
  • MR-Ultrasound Registration for Prostate Interventions (Chenxi Zhang, Andriy Fedorov, Andras)
  • Surface approximation from contour points (Chenxi Zhang, Csaba Pinter, Andrey Fedorov)
  • Steered image registration using intelligent interfaces for minimal user interaction (Marcel Prastawa, Jim Miller, Steve Pieper)
  • Image To Mesh Conversion for Brain MRI (Fotis Drakopoulos, Yixun Liu, Andrey Fedorov, Ron Kikinis, Nikos Chrisochoides)
  • An ITK implementation of Physics-Based Non-Rigid Registration method for Brain Shift (Fotis Drakopoulos, Yixun Liu, Andriy Kot, Andrey Fedorov, Olivier Clatz, Ron Kikinis, Nikos Chrisochoides)
  • Robot Control With OpenIGTLink ( Gregory Fischer(WPI), Nirav Patel(WPI), Junichi Tokuda(BWH) )

Radiation Therapy

Chronic Obstructive Pulmonary Disease

QIICR

Infrastructure

Feature Extraction

  • Breast Tumor Segmentation and Heterogeneity Analysis (Vivek Narayan, Jay Jagadeesan)
  • Quantitative image feature extraction in Non-Small Cell Lung Cancer (Hugo Aerts)

Other

Logistics

  • Dates: June 23-27, 2014.
  • Location: Stata Center / RLE MIT.
  • REGISTRATION: https://www.regonline.com/namic2014summerprojectweek. Please note that as you proceed to the checkout portion of the registration process, RegOnline will offer you a chance to opt into a free trial of ACTIVEAdvantage -- click on "No thanks" in order to finish your Project Week registration.
  • Registration Fee: $300.
  • Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
  • Room sharing: If interested, add your name to the list: here

Registrants

Do not add your name to this list - it is maintained by the organizers based on your paid registration. (Please click here to register.)

  1. Hugo Aerts, Dana Farber/Harvard, hugo_aerts@dfci.harvard.edu
  2. Peter Anderson, retired, traneus@verizon.net
  3. Nicole Aucoin, Brigham & Women's Hospital, nicole@bwh.harvard.edu
  4. Kanglin Chen, Fraunhofer MEVIS, kanglin.chen@mevis.fraunhofer.de
  5. Adrian Dalca, MIT CSAIL, adalca@mit.edu
  6. Alexander Derksen, Fraunhofer MEVIS, alexander.derksen@mevis.fraunhofer.de
  7. Fotis Drakopoulos, Old Dominion University, fdrakopo@gmail.com
  8. Jean-Christophe Fillion-Robin, Kitware, jchris.fillionr@kitware.com
  9. Saurabh Jain, Johns Hopkins University, saurabh@cis.jhu.edu
  10. Hans Johnson, University of Iowa, hans-johnson@uiowa.edu
  11. Ron Kikinis, HMS, kikinis@bwh.harvard.edu
  12. Yangming Li, University of Washington, ymli81@uw.edu
  13. Siqi Liu, University of Sydney, sliu4512@uni.sydney.edu.au
  14. Bradley Lowekamp, National Institutes of Health, blowekamp@mail.nih.gov
  15. Murat Maga, Seattle Children's Research Institute, maga@uw.edu
  16. Katie Mastrogiacomo, SPL/BWH, kmast@bwh.harvard.edu
  17. Alireza Mehrtash, SPL/BWH, mehrtash@bwh.harvard.edu
  18. Jim Miller, GE Research, millerjv@ge.com
  19. Pietro Nardelli, University College Cork, pietro@bwh.harvard.edu
  20. Yangming Ou, MGH, yangming.ou@uphs.upenn.edu
  21. Nirav Patel, WPI, napatel@wpi.edu
  22. Steve Pieper, Isomics Inc, pieper@isomics.com
  23. Csaba Pinter, Queen's University, csaba.pinter@queensu.ca
  24. Marcel Prastawa, GE Research, marcel.prastawa@ge.com
  25. Somia Pujol, Harvard Medical School, spujol@bwh.harvard.edu
  26. Adam Rankin, Queen's University, rankin@queensu.ca
  27. Ramesh Sridharan, MIT CSAIL, rameshvs@csail.mit.edu
  28. Ethan Ulrich, University of Iowa, ethan-ulrich@uiowa.edu
  29. David Welch, University of Iowa, david-welch@uiowa.edu
  30. Ryan Young, Seattle Children's Research Institute, ryan.young@seattlechildrens.org
  31. Paolo Zaffino, University Magna Graecia of Catanzaro, p.zaffino@unicz.it
  32. Chenxi Zhang, Brigham & Women's Hospital, chenxizhang@fudan.edu.cn
  33. Fan Zhang, University of Sydney, fzha8048@uni.sydney.edu.au
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