SDIWG:Meeting Minutes 20071116

Agenda: NCBC Joint Working Group Meeting

Top page of SDIWG web site

Notes

Friday, November 16, 2007: 2:30 -- 3:30 PM EST
Please contact Peter Lyster for information Peter Lyster
SDIWG Meetings Page
Save the date for the next SDWIG tcon/Connect, three months from now: Friday February 22, 2008

TCon Agenda

• Roll Call/Note-taker (Ivo Dinov) (5 min)
• Minutes from most recent SDIWG tcon Sept 21, 2007 (5 min)
• NCBC All Hand Meeting, 2008. Planning & Brainstorm discussion (Peter, Karin, All)
• Status check on two working groups: Biositemaps Resourceome, Scientific Ontologies, NCBC Driving Biological Projects Interactions and Impact
• CBC Consortium authorship policies (Peter; Open Discussion with output a list of bullet ideas)
• CTSA Informatics Meeting in Chicago at AMIA (Brian, David, any others

present)

• Discuss AMIA/ISCB translational informatics summit in March
• Discussion of Biositemaps white paper and of authorship (see more details in 'Appendix' below).
• Next 2 meeting dates set
• Questions/Information Sharing

Appendix: Biositemaps white paper

• Biositemaps Resourceome (Ivo Dinov, Daniel Rubin, Will Schroeder, Beth Kirschner, Karen Skinner, Zohara Cohen, Bill Bug, Peter Lyster)
  • The biositemaps white paper presents description of prototype for distributed architecture to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining software tools and information resources on the Internet. Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘biositemap.xml’ which conforms to a defined schema and is tagged by a resource ontology. The prototype schema may be found at http://www.ncbcs.org/biositemaps/biositemaps-v04.xsd A good reference for XML editors is at http://en.wikipedia.org/wiki/Xml_editor e.g., we are using XMLmind. The prototype resource ontology may be found at http://bioontology.org/projects/ontologies/SoftwareOntology/
  • Further postings will be made at the NCBC portal at http://www.ncbcs.org/biositemaps/
  • TBD: Converge on contents of schema and resource ontology with appropriate parties. Resolve issues of locating the biositemaps (hard-wired, crawl,...)
  • Status of the NCBC iTools, which is uses the biositemaps. http://www.loni.ucla.edu/iToolssvc/ncbc_iTools.html

Minutes

Note taker: (Ivo Dinov)

• Review of Sept 21, 2007 Minutes

1. Attending:
2. Biositemaps, Resourceome, and iTools (Ivo Dinov et al.)
3. Scientific Ontologies (Zak Kohane, et al.)
4. DBP Interactions (Gil Omenn et al.)

Attendees

• Note-taker: [Suggested order of note takers for future meetings: Dinov (this one); Chueh; Sherman; Schroeder; Floratos; Rubin; Jags]