4DUSandEndoscope
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Contents
Project Page for 4D Ultrasound with Endoscopic Overlay
Collaborators
Jan Gumprecht
- E-Mail: jgumprec(at)bwh.harvard.edu
- Location: Kyushu, Japan
- Timezone: GMT + 9
Jae-Sung Hung, PhD
- E-Mail: hong(at)dem.med.kyushu-u.ac.jp
- Location: Kyushu, Japan
- Timezone: GMT + 9
Nobuhiko Hata, PhD
- E-Mail: hata(at)bwh.harvard.edu
- Location: Boston, USA
- Timezone: GMT - 5
Haiying Liu
- E-Mail: hliu(at)bwh.harvard.edu
- Location: Boston, USA
- Timezone: GMT - 5
Yamada Atsushi, PhD
- E-Mail: yamada.atsushi(at)nitech.ac.jp
- Location: Nagoya, Japan
- Timezone: GMT + 9
Project Description
The goal of this project is to create a new 3D Slicer Module that can overlay patient registered 4D US volumes with endoscopic images.
The Project is divided into four part: 4D Ultrasound Volume Reconstruction, Patient-Image Registration, Endoscope Overlay, and Endoscope Calibration. All four parts will be accessable through a single 3D Slicer Module.
Overall Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Overlay and Endoscopic Calibration shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
New PC set up | x | Thu Jul, 30th | ||
New PC arrived | x | Tue Jul, 28th | ||
Week 31 | 27.07 - 02.08 | |||
Project Page created | x | Fri Jul, 24th | ||
July | Week 30 | 20.07.09 - 26.07.09 |
General To Do
Tasks | |
---|---|
O | Fill Project Page with Information |
O | Order new Frame Grabber Card |
DONE | Set Up New Computer |
DONE | Order new PC |
DONE | Create Project Page |
Details
- The following frame grabber card only provides grayscale images: I-O DATA GV-VCP3R/PCI (video decoder chip CX2388x) [1]
3D Slicer Module
- Responsible: Jan Gumprecht
Details
- The module is available through svn: http://svn.na-mic.org/NAMICSandBox/trunk/IGTLoadableModules/4DUsEndoNav/
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Second Window works | x | Thu, Aug 6th | ||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Created First prototype of module | x | Fri, Jul 31st | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Close Second window with OS native commands, i.e. click the "X" in the right upper corner |
O | Comprehend Prostate nav module's source code |
DONE | Include Second Window source code |
DONE | Create first prototyp of module, i.e. adapt IGTWizard Module |
4D Ultrasound Volume Reconstruction
- Responsible: Jan Gumprecht
Details
The project is described here: [[2]]
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Update Calibration and Spacing Handeling | ||||
New Commandline parameter added to grab a test image | x | Tue, Jul 30th | ||
All parameters of the calibration file are now used | x | Tue, Jul 28th | ||
OpenIGTLink is now externally, no local copy within the source code is used anymore | x | Mon, Jul 27th | ||
Week 31 | 27.07 - 02.08 | |||
Show demo of the system | ||||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Find Segmentation Fault |
O | Update Handling of Spacing |
O | Update Calibration Part |
DONE | Set up existing Hardware for first demo |
DONE | Update CalibrationFileReader |
Patient-Image Registration
- Responsible: Jae-Sung Hong
Details
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Start integration with 4D Ultrasound | ||||
Week 31 | 27.07 - 02.08 | |||
| ||||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |
Endoscope Overlay
- Responsible: Yamada Atsushi, Haiying Liu
Details
- OpenCV Module in Slicer3
- Multiple Camera Support in Slicer3
- Transrectal/Transperineal biopsy robot module merge
- Open CV Wiki
- Summer Second Display Project (Japanese)
Bug Fixes for the 3D Slicer Module
- There is a bug in OpenCV related to V4L2 devices:
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Overlay shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |
Endoscope overlay |
Endoscope Calibration
- Responsible: Dr. Yang
Details
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Calibration shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |