Projects:DTIProcessingTools
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DTI Processing and Statistics Tools
- Correction for Geometric Distortion in Echo Planar Images We have developed a variational image-based approach to correct the susceptibility artifacts in the alignment of diffusion weighted and structural MRI.The correction is formulated as an optimization of a penalty that captures the intensity difference between the jacobian corrected EPI baseline images and a corresponding T2-weighted structural image.
R Tao, PT Fletcher, S Gerber, R Whitaker, A Variational Image-Based Approach to the Correction of Susceptibility Artifacts in the Alignment of Diffusion Weighted and Structural MRI, IPMI 2009
- Eddy Current Correction We implemented the diffusion weighted image (DWI) registration model from the paper of G.K.Rohde et al. Patient head motion and eddy currents distortion cause artifacts in maps of diffusion parameters computer from DWI. This model corrects these two distortions at the same time including brightness correction.
[1] G.K.Rohde, A.S.Barnett, P.J.Basser, S.Marenco, and C.Pierpaoli, et al., "Comprehensive Approach for Correction of Motion and Distortion in Diffusion-Weighted MRI," Magnetic Resonance in Medicine 51:103-114(2004)
- Differential Geometry We will provide methods for computing geodesics and distances between diffusion tensors. Several different metrics will be made available, including a simple linear metric and also a symmetric space (curved) metric. These routines are the building blocks for the routines below.
- Statistics Given a collection of diffusion tensors, compute the average and covariance statistics. This can be done using the metrics and geometry routines above. A general method for testing differences between groups is planned. The hypothesis test also depends on the underlying geometry used.
- Interpolation Interpolation routines will be implemented as a weighted averaging of diffusion tensors in the metric framework. The metric may be chosen so that the interpolation preserves desired properties of the tensors, e.g., orientation, size, etc.
- Filtering We will provide anisotropic filtering of DTI using the full tensor data (as opposed to component-wise filtering). Filtering will also be able to use the different metrics, allowing control over what properties of the tensors are preserved in the smoothing. We have also developed methods for filtering the original diffusion weighted images (DWIs) that takes the Rician distribution of MR noise into account (see MICCAI 2006 paper below).
Description
- Developed a Slicer module for our DT-MRI Rician noise removal during the 2007 Project Half Week. Also enhanced the method by including an automatic method for determining the noise sigma in the image.
- Developed prototype of DTI geometry package. This includes an abstract class for computing distances and geodesics between tensors, while derived classes can specify the particular metric to use. Current implemented subclasses are the basic linear metric and the symmetric space metric.
- Developed prototype of DTI statistical package. A general class has been developed for computing averages and principal modes of variation of tensor data. The statistics class can use any of the metrics described above.
- We have begun work on a general method for hypothesis testing of differences in two diffusion tensor groups. This method works on the full six-dimensional tensor information, rather than derived measures. The hypothesis testing class can also use any of the different tensor metrics.
- Participated in the Programmer's Week (June 2005, Boston). During this week the DTI statistics code was developed and added to the NA-MIC toolkit. See our Progress Report (July 2005).
Key Investigators
- Utah: Tom Fletcher, Ran Tao, Saurav Basu, Sylvain Gouttard, Ross Whitaker
Publications
In Print
