Proposed work pipeline

1. Ginger: produce ICC mask for chosen template: Gucci

1. Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline

1. Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF

        Ron helps to manually segment sub-cortical structures.
     
        produce Slicer3 module for back propagation and manual correct the results

        smooth back propagation results to generate final templates

1. Andriy: register atlas to each subjects and apply resulting transformation to align atlas to each subjects

1. Ginger: finalize by EM segmentation.

Meanwhile: Ginger will perform EM segmentation on Gucci to separate into WM, GM, CSF and Ron helps to segment sub-cortical structures.