Engineering:TCON 2010

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2010-03-25

Attendees: wendy, nicole, dominik, vince, tina, jim, dave, luis, katie, steve, ron, xiaodong, stephen, jj, jc, j2

  • MIDAS Feedback from John M./Tina
  • Slicer 3.6
    • Documentation
    • testing and code coverage
    • VTK status
  • Slicer 4.0
    • Community process (Stephen Aylward)
      • Superbuild status (Dave)
      • qt status (Julien)
      • Module acceptance process
        • From Nitrc
        • With Slicer
    • Educating the community about the benefits of Qt (Steve Pieper)

Notes

  • Slicer Extensions
    • Reuse Statistics functionalities from MIDAS to report on downloads from
    • http://ext.slicer.org/ext/trunk/
    • Building Slicer extensions and submit them to the Slicer Dashboard
    • Where are they located ? (it is described in the .s3ext files:)
    • Maybe build them only when their source code is actually modified ?
    • Label extensions by a level of compliance with NAMIC practices ?
      • E.g. Gold, Silver, Bronze,... Coal.
        • Gold: have > 80% coverage, 0 Valgrind errors, documentation and tutorial
        • Silver: have > 70% coverage, < 10 Valgrind errors, and tutorial
        • Bronze: have > 60% coverage, < 50 Valgrind errors, and tutorial
        • Coal: have < 10% coverage, > 1000 Valgrind errors, no documentation, no tutorial
    • Web of trust
      • Have gatekeepers who review the extension and label them accordingly.
      • Define a Testing procedure for Slicer 4.0. (Check lists)
    • Community Support
      • Provide User Ratings (based on the Insight Journal / MIDAS functionality)
      • Use current MIDAS C++ API to Upload/Download data.
      • Create MIDAS Plugins to manage data / code for Slicer extensions
  • Slicer Release 3.6
    • VTK Release 5.6 : March 26th 2010
    • Immediately after, switching Slicer to use VTK 5.6.
    • Sorting out KWWidget issues on Windows 7 with VTK 5.6 (VTK CVS HEAD).
  • Slicer Release 4.0
    • Git: Conversion of CMake, VTK, Paraview
    • Moving Slicer to Git ?
    • ITK 4.0 will move to a clean Git repository (full reset of the history)
    • Moving only Slicer modules that satisfy the Gold criteria.
    • A2D2 Idea : port CLI modules to ITK 4.0
    • Question about CLI modules in CTK for Slicer 4.0: Discovery process; making it cleaner by using Qt methods. But raise the concern of forcing a dependency on Qt (that not everybody may want).
      • Have specific mechanisms of discovery based on : Python, Qt, C++.
  • Slicer Superbuild
    • Dave reported on progress
      • Dealing with patches that getbuildtest.tcl applies to the third party libraries.
        • Difficulty of applying patches. Need for a multi-platform way of applying patches
        • Hosting git repositories with the patched versions of the third party libraries.
        • Use github ? create a "Slicer" user-account ?

2010-03-18

Attendees: Andriy (ran out of the room before he could take notes) Nicole, Dominik Wendy, Steve, Stephen, Jim, Katie

2010-03-11

Attendees: Dan, Tina, Vince, Xiaodong, Wendy, Nicole, Katie, Kurt, Dominic, John

  • Updated Download page
    • Do we want to add images?
      • Yes, please. And also to format this into a table. Thanks.
  • OpenIGT and Medtronic Navigation
    • Consider a joint grant to fund the development
  • Ron can kill 18 birds with one stone.

2010-03-04

Attendees: jim, ron, nicole, vince, dan, katie, wendy, dominic, tina

  • GetNodesByName leaking the collection from Tcl ( set foo [$::slicer3::MRMLScene GetNodesByName bar] )
  • VTK GPU Mapper - Mac driver issue. But otherwise is working well with compositing. Dual 3D issue tabled for now.
  • Store the Collapse of the SliceController in the Layout node?
  • Should the layout of the modules (left verses right) be stored in the scene? Not for now.
  • DICOM databases. See discussion on mailing list.
    • DICOM Schemas. Jim tried searching for Osirix's schema. What about the XNAT schema? What about ClearCanvas?
    • Extend Schemas for MRML, Project views, NRRD, VTK files, etc.

2010-02-25

Attendees: john, marco, dominik jim, steve, wendy, tina, nicole, ron, vince, dan, katie

  • MIDAS handles - fixed
  • GWE's RSE ("Record Set Explorer") version 0.6.1.alpha released:
  • Slicer Release 3.6 Feature Freeze on April 1
  • Japanese Slicer workshop in 2 weeks
  • CTK workshop last week - went well

2010-02-18

Attendees: Jim, Steve, Wendy, Dan, Dominik, Katie, Nicole

  • Discussion of whole body CT/MR data (Dan)
  • Discussion of the "Spit Kidney"
  • Dominik's registration case library data for download
  • Discussion of download data for each module (like in ChangeTracker currently)
  • Tutorials and Datasets
  • Discussion of slicer 3.6 release schedule.

2010-02-11

Attendees: Jim, Katie, Curt, Casey, Tina, Xiaodong, Steve, Wendy, Dan, John, Dominik, Nicole

Agenda:

  • NA-MIC data migration is complete and the Downloads page has been brought out to the Wiki sidebar (http://www.na-mic.org/Wiki/index.php/Downloads)
    • Feedback is requested on the sidebar
    • Feedback is requested on the Downloads page
    • Feature request to track the downloads like it is done on the publication database. (Julien reports it is already available to administrators).
    • Curt will work with John to add Meshing Module tutorial.
    • Dominik will try putting some data in midas to see how much context can be added.
    • John will check with Marek about Harvard data that had been on BIRN.
  • Review of DBP2 webpages, which need updating
    • Ron has contacted the parties directly
  • Dan: XNAT workshop this summer (possibly June 28, 29, 30 in St. Louis)?
  • Discussion of entry behavior on
  • New Volume features from Xiaodong for viewing image sets in a directory (cool!)

2010-02-04

Attendees: Xiaodong, Tina, Casey, John, Dan, Vince, Stephen, Nicole

Agenda:

DBP Tutorials should be listed at the top. Software should point to Slicer and the NA-MIC Kit. Data hosting is available on XNAT and Midas.

2010-01-28

Attendees: Xiaodong, Tina, John M, Katie, Nicole, Dominik, Vince, Casey

Agenda

  • data update (john m): Discussion of Data & Tutorials on the following page. Discussion of where to put the data (XNAT or Midas).

2010-01-21

Attendees: Jim, Katie, Nicole, Wendy, Curt, Ron, Dominic, Steve, Dan

  • Update wiki pages in preparation for the review of the NA-MIC renewal

2010-01-14

Attendees: Katie Ben Casey Yin Tina Vince Jim Satra Nicole Lauren Hiro Fernando Chris Brian Dominik Ron

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