DBP2:UNCFinal:2010

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Software

• ARCTIC: Automatic Regional Cortical ThICkness
  • Description:
    • ARCTIC is an end-to-end application allowing individual analysis of cortical thickness
    • Pipeline: performs tissue segmentation, regional atlas deformable registration, cortical thickness measurements, volume information stored in spreadsheets
    • Visualization: white matter and gray matter mesh creation
    • Quality control: optimal QC via 3D Slicer MRML scenes
  • Download:
    • • Source code, executables and tutorial are available on NITRC
  • Documentation:
    • NITRC wiki page
    • Slicer 3.6 documentation
  • Tutorials:
    • ARCTIC tutorial : end-to-end Slicer3 module to perform automatic regional cortical thickness analysis‏ [ppt]‏ [pdf]
    • Online documentation within Slicer 3.6
    • Download ARCTIC Example dataset

• GAMBIT

Listing and short description of the sample data

• Pediatric Brain MRI data
  • Data of 2 autistic children and 2 normal controls (male, female) scanned at 2 years with follow up at 4 years from a 1.5T Siemens scanner. Files include structural data, tissue segmentation label map and subcortical structures segmentation.

• ARCTIC Tutorial dataset:
  • Download Example dataset

• Brain Atlases
  • Pediatric atlas
  • Adult atlas
  • Elderly atlas
  • Primate atlas

Related pages

• Slicer 3.6 download
• Slicer 3.6 documentation

References

H.C. Hazlett, C. Vachet, C. Mathieu, M. Styner, J. Piven, Use of the Slicer3 Toolkit to Produce Regional Cortical Thickness Measurement of Pediatric MRI Data, presented at the 8th Annual International Meeting for Autism Research (IMFAR) Chicago, IL 2009