User:Inorton

Isaiah Norton, Golby Lab, Department of Neurosurgery

Slicer Notes

Things that aren't fleshed-out enough to go into Mantis, or if I can't fully reproduce yet, can't share the data right now, etc..

Can't load high-res MEMPRAGE MRI from MGH for AG case in Slicer3. workaround: loaded fine in slicer2, then saved as nrrd. DicomToNRRD also works.
CropVolume changes image intensity

Better transform handling in the reg meta-code: should sort out any hierarchies for cross-registration (ie, want to register to something that is already inside another transform)
Put models inside appropriate transform after generation
Editing volume inside of transform - don't want to have to move volumes out of transform every time to change labelmaps in a complex scene.
Slice intersections in 3D viewer, ie lines/gray/highlight/etc. at the intersection point (helps with depth perception). In Slicer3 this is only supported in 2d widgets.
intelligent fiducial picking: for example, jump to nearest local min/max (like spm)
option to load nrrd immediately after DicomToNrrd (cli need tweak to add post-handling options?)
dynamic (python) module reload