2011 Winter Project Week:Breakout Slicer

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Session Leaders: Steve Pieper, Julien Finet

This session looks at the development of Slicer4.

People interested in the use of Slicer3.6 should consider attending the Monday breakout session with Ron.

Slicer4 Architecture & Status - Steve

This talk will provide an overview of the technologies included in slicer4 and the transition path from slicer3 to slicer4. slides

Slicer4 Architecture Diagram

See this page for status of slicer4 development and the Qt port.

Creating a Loadable C++ Module - J2

Python Scripting - Jc

Command line modules / Slicer Execution Model - Jim

  • What can it do?
  • What do we have plans for?
  • What do you want?
  • Slides

ITK4 Integration - Bill

Slicer4/ITK4 integration

Afternoon Qt Loadable Module Tutorial

How to write a loadable module

Plans

Plans for the time between Jan 2011 and June 2011. Identify a list of modules that are still missing and must be available, when we roll out Slicer 4 for end users. We need to identify owners for each of these:

Developer Contacts for Slicer4

For modules currently scheduled for porting or already ported.

to: primary contact going forward

cc: was involved with the porting to Qt

  • Colors - to: Nicole, cc: Julien
  • Data/Dicom import/load - to:Steve
  • Editor - to:Steve
  • Models - to:Alex, cc:Julien
  • Mouse Modes - to:Wendy
  • ROI - to:Alex, Daniel, cc:Julien (to be transitioned to the Annotation module)
  • SlicerWelcome - to:Wendy, cc: JC
  • Slices - to:Jim, cc: JC
  • Transforms - to:Alex, cc: JC
  • Volume rendering: Redesign?
    • GPU mappers (NCI: Yanling; Kitware: J2)
    • Nodes and Displayable Managers to:Alex Y, cc: JC
    • Qt GUI to:Julien, cc:JC
  • Volumes - to:Julien, cc:Alex
  • Diffusion frame work: Redesign? - to:Demian, cc:CF
    • FibreBundles - cc:Alex
    • DiffusionWelcome - to:Demian
    • Tractography - to: Alex
  • Endoscopy - to: Steve, cc:JC
  • Brainsfit - to:Hans
  • EM segementation - to:Dominique, cc:Kilian, cc:JC (Qt only)
    • AtlasCreator - to:Daniel
  • Fast Marching - to:Andrey
  • GrowCutSegement - to:Harini, cc: Jim, Steve
  • RSS (robust statistical segmentation): to:Yi Gao
  • CompareView - to:JC, cc:Julien, Jim, Steve, Wendy
  • Wizards
    • NeuroNav - to:Laurent Chauvin?, cc:Noby Hata
    • ProstateNav? - to:Andras,Andrey
    • ChangeTracker? - to:Andrey
  • IGT
    • OpenIGTLinkIF - to: Junichi
  • Extensions
    • Factory - to: Dave P, cc: JC, Steve
    • VMTK? - to:Daniel, cc:Suares,Luca
    • TubeTK - to:Danielle, cc: StephenA
  • FetchMI - to:Wendy, cc:JC
  • LabelStatistics - to:Steve
  • Annotations - to:Daniel, cc:Nicole, Kilian
  • SceneView - to:Daniel
  • Command line module - to:Jim, cc:Julien
  • CropVolume - to:Andrey
  • PETCTFusion - to: Wendy
  • RegistrationWelcome - to: Dominik Meier
  • SegmentationWelcome - to: Dominik Meier

Not Currently Scheduled For Porting

  • QueryAtlas?
  • CaptureBetaProbe - to:Laurent
  • ClipModel - to:Alex
  • CollectFiducials - to:?
  • DistanceTransformModel - to:Steve
  • FourDImage - to: Junichi
  • IGT
    • IGTRecorder - to:Steve
    • IGTToolSelector - to:Brian (Northern Digital), cc: Steve
  • ModelIntoLabelVolume - to: Nicole
  • SlicerDaemon - to: Steve
  • IntensityNormalization - to: Andrey
  • Meshing - to: Curtis
  • ModelMirror - to: Wendy
  • Pharmacokinetics - to: Wendy
  • ModelTransform - to: Alex
  • UDPServer - to: Laurent
  • Python - to:Steve
    • BinarizeScalarValues.py
    • ConvertFiducialToLabelMap.py
    • ConvertVolumeToArray.py
    • CreateROIPerLabel.py
    • ExplodeVolumeTransform.py
    • LoadVolumeFromArray.py
    • NumpyScript.py
    • PythonScript.py
    • RecenterMaskToDWI.py
    • ShiftDWIValues.py
    • SliceDWIPerVolume.py
    • StochasticTractoGraphyGenerator.py
    • StochasticTractoGraphyGeneratorWithLabels.py
    • StochasticTractography.py
    • StochasticTractographyServer
    • StochasticTractographyServerMP
    • SurfaceConnectivity.py
    • SurfaceICPRegistration.py
    • SurfaceToolbox.py

ToBeRemoved

  • ExtractSubvolume
  • ExtractSubvolumeROI
  • GradientAnisotropicDiffusion
  • Measurements
  • PythonGADScriptedModule
  • QueryAtlas
  • ScriptedModule
  • ScriptedModuleExample
  • VolumeRendering1

New Modules

  • Annotation
  • SceneViews
  • TubeTK?

MRML and Annotation Breakout

To be filled in from Nicole's notes

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