Projects:ARRA:SlicerEM:AtlasCreator:Tests

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Home < Projects:ARRA:SlicerEM:AtlasCreator:Tests

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1 Atlas Creator Tests

Atlas Creator Tests

Successful tests running the Atlas Creator are shown here.

01: Fixed with CMTK on 6 Cases

Machine: b2-t74-2
- CPU: 4x Xeon 3 GHz
- RAM: 32 GB
- OS: Linux 64
- AtlasCreator Version: 0.21

No. of Cases: 6 (5 against 1 template)
Template Type: Fixed
Toolkit: CMTK
Registration Type: Affine
Runtime: 11 minutes

Log: File:Log.txt
MRML Scene: File:01cmtkFixed.zip

Fixed Template
Combined Atlas output
Atlas for label 3 output
Atlas for label 4 output
Atlas for label 5 output
Atlas for label 6 output
Atlas for label 8 output
Atlas for label 10 output
Checkerboard: Before-Template and After-Template
Checkerboard: Before-Template and After-Template 2

02: Fixed with BRAINSFit on 6 Cases

Machine: sbia-pc66
- CPU: ?
- RAM: ?
- OS: ?
- AtlasCreator Version: 0.21

No. of Cases: 6 (5 against 1 template)
Template Type: Fixed
Toolkit: BRAINSFit
Registration Type: Affine
Runtime: 29 minutes

Log: File:02Log.txt
MRML Scene: File:02brainsfitFixed.zip

02template.png

Fixed Template
02atlas.png

Combined Atlas output
02atlas3.png

Atlas for label 3 output
02atlas4.png

Atlas for label 4 output
02atlas5.png

Atlas for label 5 output
02atlas6.png

Atlas for label 6 output
02atlas8.png

Atlas for label 8 output
02atlas10.png

Atlas for label 10 output
02exampleBeforeAndAfter.png

Checkerboard: Before-Template and After-Template
02exampleBeforeAndAfter2.png

Checkerboard: Before-Template and After-Template 2

03: Dynamic with CMTK on 6 Cases

Machine: sbia-pc66
- CPU: 4x Core i7 2.66 GHz
- RAM: 8 GB
- OS: Mac OS X Snow Leopard
- AtlasCreator Version: 0.21

No. of Cases: 6
Template Type: Dynamic
Iterations: 2
Toolkit: CMTK
Registration Type: Affine
Runtime: 28 minutes

Log: File:03Log.txt
MRML Scene: File:03cmtkDynamic.zip

Dynamic Template
Combined Atlas output
Atlas for label 3 output
Atlas for label 4 output
Atlas for label 5 output
Atlas for label 6 output
Atlas for label 7 output
Atlas for label 8 output
Atlas for label 9 output
Atlas for label 10 output
Atlas for label 31 output
Atlas for label 32 output
Checkerboard: Before-Template and After-Template

04: Dynamic with BRAINSFit on 6 Cases

Machine: sbia-pc66
- CPU: 4x Core i7 2.66 GHz
- RAM: 8 GB
- OS: Mac OS X Snow Leopard
- AtlasCreator Version: 0.21

No. of Cases: 6
Template Type: Dynamic
Iterations: 2
Toolkit: BRAINSFit
Registration Type: Affine
Runtime: 64 minutes

Log: File:04Log.txt
MRML Scene: File:04brainsfitDynamic.zip

Dynamic Template
Combined Atlas output
Atlas for label 3 output
Atlas for label 4 output
Atlas for label 5 output
Atlas for label 6 output
Atlas for label 7 output
Atlas for label 8 output
Atlas for label 9 output
Atlas for label 10 output
Atlas for label 31 output
Atlas for label 32 output
Checkerboard: Before-Template and After-Template

05: Fixed with CMTK on 50 Cases

Machine: b2-t74-3
- CPU: 4x Xeon 3 GHz
- RAM: 32 GB
- OS: Linux 64
- AtlasCreator Version: 0.21

No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
Template Type: Fixed
Toolkit: CMTK
Registration Type: Affine
Runtime: 162 minutes

Log: File:05CmtkFixed.txt
MRML Scene: File:05cmtkFixed.zip

Fixed Template
Combined Atlas output
Atlas for label 3 output
Atlas for label 4 output
Atlas for label 5 output
Atlas for label 6 output
Atlas for label 7 output
Atlas for label 8 output
Atlas for label 9 output
Atlas for label 10 output
Atlas for label 31 output
Atlas for label 32 output
Checkerboard: Before-Template and After-Template

06: Fixed with BRAINSFit on 50 Cases

Machine: b2-t74-3
- CPU: 4x Xeon 3 GHz
- RAM: 32 GB
- OS: Linux 64
- AtlasCreator Version: 0.21

No. of Cases: 50 (49 against 1 template), skull-stripped + bias corrected
Template Type: Fixed
Toolkit: BRAINSFit
Registration Type: Affine
Runtime: 241 minutes

Log: File:06brainsfitFixed.txt
MRML Scene: File:06brainsfitFixed.zip

Fixed Template
Combined Atlas output
Atlas for label 3 output
Atlas for label 4 output
Atlas for label 5 output
Atlas for label 6 output
Atlas for label 7 output
Atlas for label 8 output
Atlas for label 9 output
Atlas for label 10 output
Atlas for label 31 output
Atlas for label 32 output
Checkerboard: Before-Template and After-Template

07: Dynamic with BRAINSFit on 50 Cases

Machine: b2-t74-3
- CPU: 4x Xeon 3 GHz
- RAM: 32 GB
- OS: Linux 64
- AtlasCreator Version: 0.21

No. of Cases: 50
Template Type: Dynamic
Iterations: 5
Toolkit: BRAINSFit
Registration Type: Affine
Runtime: 1244 minutes (< 24h)

Log: File:07brainsfitDynamic.txt
MRML Scene: File:07brainsfitDynamic.zip

Dynamic Template
Combined Atlas output
Atlas for label 3 output
Atlas for label 4 output
Atlas for label 5 output
Atlas for label 6 output
Atlas for label 7 output
Atlas for label 8 output
Atlas for label 9 output
Atlas for label 10 output
Atlas for label 31 output
Atlas for label 32 output
Checkerboard: Before-Template and After-Template

08: Dynamic with CMTK on 50 Cases

Machine: b2-t74-1
- CPU: 4x Xeon 3 GHz
- RAM: 32 GB
- OS: Linux 64
- AtlasCreator Version: 0.21

No. of Cases: 50
Template Type: Dynamic
Iterations: 5
Toolkit: CMTK
Registration Type: Affine
Runtime: 3099 minutes (>48 h)

Log: File:08cmtkDynamic.txt
MRML Scene: File:08cmtkDynamic.zip

Dynamic Template
Combined Atlas output
Atlas for label 3 output
Atlas for label 4 output
Atlas for label 5 output
Atlas for label 6 output
Atlas for label 7 output
Atlas for label 8 output
Atlas for label 9 output
Atlas for label 10 output
Atlas for label 31 output
Atlas for label 32 output
Checkerboard: Before-Template and After-Template

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