Slicer:Workshops:User Training 101

This is the introductory Slicer 2.6 Tutorial.

Link to the NAC website

Introduction

You can begin to learn how to

• ** load and view data
  • segment data and create 3D models
  • use the DTI and fMRI modules
  • For an overview, dowload this slideshow

Software Installation

Please install the following software applications and files from the NAMIC site before the course: the current version of the Slicer program appropriate to your platform, the tutorial guide for Slicer, the generic sample data set.

This material is located in Slicer 2.6 Getting Started: Software & Sample Data .

Data to Download

• ** Get the Tutorial Data with Dicom tutorial_with_dicom.zip
  • Get this extra set of interoperative data mrt-images.zip
  • Get this data for testing registrations reg-sample.zip
  • Get these data for DTI demonstrations: SlicerSampleDTI.zip dwi-dicom.zip
  • Get these data for FreeSurfer demonstrations: FreeSurferSubjects.zip
  • Get these data for EMAtlasBrainClassifier demonstrations: BrainAtlasClassifier.zip
  • Get these data for EMSegmenter demonstrations: EMSegmentTutorial.zip
  • Get these Tensor data for DTI Nrrd File Format demonstrations: TensorData.zip
  • Get these Tensor data for DWI Nrrd File Format demonstrations: dwi-dicom.zip
  • Get these data for fMRI demonstrations: fMRIData_short.zip, fMRIData_long.zip

Slicer Training

• ** Slicer Training 1: Loading and Viewing Data '
  • Slicer Training 2: Manual Segmentation and Model Making
  • Slicer Training 3: Level-Set Segmentation
  • Slicer Training 4: DT-MRI module
  • Slicer Training 5: fMRI module
  • Slicer Training 6: vtkFreeSurferReaders Module
  • Slicer Training 7: Saving Data
  • Slicer Training 8: Nrrd File Format
  • Slicer Training 9: Dicom to Nrrd Conversion

Slicer Advanced Modules

• ** Slicer Advanced Training: EMBrainAtlasClassifier
  • SPL PNL Brain Atlas
  • IGT Tutorial Materials
  • EMSegmenter for multi-channel data and white matter hyperintensities

Bug reports and Feedback

• Bug reports
• Feedback about Slicer

Acknowledgements

• ** Slicer is being developed by a community of contributors. For more information see the Slicer website.

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