Projects:ARRA:SlicerEM:AtlasCreator:Groupwise
From NAMIC Wiki
Home < Projects:ARRA:SlicerEM:AtlasCreator:Groupwise
Back to AtlasCreator..
Integration of Groupwise Registration in the AtlasCreator
Action Plan
- Step1 (until 04/01/11):
Daniel will get the code from Jeremy and dump it into our atlascreator/commandline directoryDaniel will compile the code under slicer - should you run into problems Jeremy is going to work on figuring them out with / for Daniel . If the code needs changes, Jeremy is responsible for implementing themDaniel waits for the GIT repository from Jeremy</strike- Then, run some tests provided by Jeremy
- If Congeal doesn't compile cross platform then we could use the Slicer extension system as a backup
- Step 2 (until 04/01/11):
Daniel will write a wrapper to create Congeal config files by specifying command line argumentsJeremy and Daniel will communicate if the "wrapper" fits Congeal's config needs and test the config files
- File formats:
- Congeal supports NIfTI-1 file format
- Slicer does too :)
- Step 3 (until 04/06/11):
- Daniel will modify the atlas creator so that he can access the wrapper
- Step 4 (until 08/04/11):
- Daniel creates an advanced tab in our tool that makes some of the key parameter visible to user and modify the docu accordingly
- Jeremy will give us a link or modify our wiki page with respect to the meaning of specific parameters , ....
- Step 5:
- Be happy
Questions
- For all:
- For Kilian:
- How does this effort coordinate with the integration of PCA? Which one has higher priority? (Daniel)
- PCA will sit on top of this. This effort is an alternative to the registration stage. (Daniel after talking to Kilian)
- How does this effort coordinate with the integration of PCA? Which one has higher priority? (Daniel)
- For Jeremy:
Please send the code after you are done cleaning up (Daniel)
- For Daniel: