2015 Summer Project Week
Logistics
Location: NH COLLECTION CONSTANZA Hotel, Barcelona
Agenda:
- Sunday, June 21st
- early evening: project presentations
- Monday June 22
- Tuesday June 23
- Late afternoon: breakout session on the Open Software Stack
- Wednesday June 24
- Adjourn at 5pm
Registration Fee: zero. We will cover the charge for the conference room, while all attendees are responsible for their own hotel rooms as well as food.
Agenda
| Time | Sunday, June 21 | Monday, June 22 | Tuesday, June 23 | Wednesday, June 24 |
|---|---|---|---|---|
| 7:00am-3:00pm: | 6:00-7:00pm Meeting with All Participants |
10:00-11:30am: Breakout Session: DICOM (Steve Pieper) |
11:00am-12noon: Breakout Session: |
10:00am-12noon: Breakout Session: Image-Guided Therapy - Neurosurgery (Alexandra Golby, Tina Kapur) |
| 3:00pm-5:00pm | Lunch | Lunch | Lunch | |
| 5:00-7:00pm | 5:00-6:30pm: Breakout Session: Contours (Adam Rankin, Csaba Pinter) |
5:00-7:00pm: Breakout Session: the Open Software Stack (Steve Pieper) |
||
| 7:00pm | Adjourn for the day | Adjourn for the day | Adjourn for the day | Adjourn for the day |
Background
Founded in 2005, the National Alliance for Medical Image Computing (NAMIC), was chartered with building a computational infrastructure to support biomedical research as part of the NIH funded NCBC program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform 3D Slicer, built using VTK, ITK, CMake, and CDash, and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an event called Project Week.
Project Week is a semi-annual event which draws 80-120 researchers. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.
Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.
Several funded projects use the Project Week as a place to convene and collaborate. These include NAC, NCIGT, QIICR, OCAIRO, and NCI Funded Image-Guided Fellowship Program.
A summary of all previous Project Events is available here.
This project week is an event endorsed by the MICCAI society.
Please make sure that you are on the na-mic-project-week mailing list
Projects
Image-Guided Therapy
Huntington's Disease
TBI
Stroke
Cardiac
Chronic Obstructive Pulmonary Disease, Lung, Chest
- LungCAD (Jayender Jagadeesan)
QIICR
- Integration and testing of new DCMTK with Slicer (Michael Onken, Andrey Fedorov)
Quantitative Radiology
Feature Extraction
- Big Data Medical Image Analysis using Local Features (Matthew Toews, William Wells)
Additional Brain Image Analysis
Infrastructure
Astronomy
- visualization of HI in galaxies (Davide Punzo)
Slicer4 Extensions
TMJOA RO1 - Collaboration with NAMIC
Infrastructure
- Running CLI Modules in the background in MeVisLab (Hans Meine)
- CLI Modules elasticsearch / kibana dashboard (Hans Meine, JC)
- CTK plugins / paths towards interoperability with GUI & interaction (Hans Meine, ??)
- Interoperability tests with "interesting" CLI modules (BRAINSFit, CIP, UKFTractography?) in MeVisLab (/Frontier) (Hans Meine, Steve Pieper)
- Return fiducials from CLIs (Nicole Aucoin, Jim Miller)
- Simplify use of python scripts from the command line (Andrey Fedorov, Steve Pieper, Robin Weiss, Artem Mamonov)
Logistics
- Dates: June 21-24, 2015.
- Location: NH Collection Constanza Hotel, Barcelona, Spain
- REGISTRATION: Please register by adding your name to the list below
- Registration Fee: None
- Hotel: You are welcome to book a room using the CARS 2015 conference services (Click here for form)
- Room sharing: If interested, add your name to the list: here
Registrants
Please add your name to the list. This is the registration mechanism for this project week.
- Tina Kapur, BWH
- Ron Kikinis, BWH & Fraunhofer
- Steve Pieper, Isomics
- Tamas Ungi, Queen's University, Canada
- Andras Lasso, Queen's University, Canada
- Paolo Zaffino, ImagEngLab, Magna Graecia University, Italy
- Salvatore Scaramuzzino, ImagEngLab, Magna Graecia University, Italy
- Giampaolo Pileggi, ImagEngLab, Magna Graecia University, Italy
- Hans Meine, Fraunhofer MEVIS, Bremen, Germany
- Nicole Aucoin, BWH
- Sonia Pujol, BWH
- Dženan Zukić, Kitware, Carrboro, NC
- Jayender Jagadeesan, BWH
- Guido Gerig, Utah
- Sandy Wells, BWH
- Matthew Toews, École de Technologie Supérieure, Montreal, Canada
- Frank Preiswerk, BWH
- Junichi Tokuda, BWH
- Jonathan Scalera, BWH
- Raul San Jose, BWH
- Jorge Onieva, BWH
- James Ross, BWH
- Yulong Zhao, Université de Rennes
- Laurent Chauvin, BWH
- Michael Onken, Open Connections
- Tobias Penzkofer, Department of Radiology, Charité Berlin, Germany
- Javier Pascau, Universidad Carlos III de Madrid, Spain
- Angel Torrado-Carvajal, Universidad Rey Juan Carlos, Madrid, Spain
- Nobuhiko Hata, BWH
- Robert H. Owen, BK Medical ApS, Denmark
- Clare Tempany BWH
- Adam Rankin, Robarts
- Utsav Pardasani, Robarts
- Marcelo Romero, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico
- J. Jesus Montufar, Facultad de Ingenieria, Universidad Autonoma del Estado de Mexico, Mexico
- Davide Punzo, Kapteyn Astronomical Institute, University of Groningen, Netherlands
- Andrey Fedorov, BWH
- Nicolas Rannou, BCH
- Mikael Brudfors, Universidad Carlos III de Madrid, Spain
- Laura Sanz, Universidad Carlos III de Madrid, Spain
- Eugenio Marinetto, Universidad Carlos III de Madrid, Spain
- David García, Universidad Carlos III de Madrid, Spain
- Franklin King, Queen's University / BWH
- Jorge García, Universidad Politécnica de Madrid, Spain
