Slicer3:ColorsFiducialsFreesurferModelmaker

2007 AHM Project Half Week

• 4 block:Colors
• 4 block:Fiducials
• 4 block:FreeSurfer
• 4 block:ModelMaker

Colors

• MRML Color nodes implemented
• basic module UI done, display colours with scalar id, names, color box
• incorporated color node selector in volumes and models GUIs
• FreeSurfer default Heat, Green/Red look up tables are supported, as well as reading in default labels and annotation labels, and loading color tables from annotation files.
• Procedural color nodes expanded, support for vtkColorTransferFunction as well as vtkLookupTable in the viewer widget.
• Scalar overlays supported in the Models GUI, Display tab.
• TO DO: continue work on UI

Fiducials

• MRML Node for list implemented, GUI for module refined
• vtkGlyphSource2D subclassed for Slicer, StarBurst option integrated
• vtkSlicerGlyphSource2D usable in both the main viewer and in 2D slices
• S. Pieper linked 2D and 3D fiducials
• TO DO: debug 3D glyphs for the 3D window, add picking in the 3D window

FreeSurfer

• MGH ITK Reader ported from NAMIC Sandbox, works as any other volume reader now
• Slicer 2.x source code ported as a Slicer 3 Library, used in Query Atlas scripts
• FreeSurfer .W surfaces and CURV surfaces are loadable through the Models GUI
• FreeSurfer scalar overlays are loadable via the Models Display GUI
• TODO: other volume format support through the GUI instead of just scriptable, integrate FSLookupTable with the MRML Color Nodes

ModelMaker

• Implemented as a Command Line Module
• TODO: link in the vtkMRMLColorNode classes to name models