2017 Winter Project Week

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Welcome to the web page for the 24th Project Week!

The 24th NA-MIC Project Week open source hackathon is being held during the week of January 9-13, 2017 at MIT. Please go through this page for information, and if you have questions, please contact Tina Kapur, PhD.

Logistics

  • Dates: January 9-13, 2017.
  • Location: MIT CSAIL, Cambridge, MA. (Rooms: Kiva, R&D)
  • Transportation: Public transportation is highly encouraged, as no parking permits will be issued by MIT. For a list of local garages, please see here
  • REGISTRATION: Register here. Registration Fee: $330.
  • Hotel: Similar to previous years, no rooms have been blocked in a particular hotel.
  • Next Project Week:' June 26-30, 2017, Catanzaro, Italy

Introduction

The National Alliance for Medical Image Computing (NAMIC), was founded in 2005 and chartered with building a computational infrastructure to support biomedical research as part of the NIH funded NCBC program. The work of this alliance has resulted in important progress in algorithmic research, an open source medical image computing platform 3D Slicer, enhancements to the underlying building blocks VTK, ITK, CMake, and CDash, and the creation of a community of algorithm researchers, biomedical scientists and software engineers who are committed to open science. This community meets twice a year in an open source hackathon event called Project Week.

Project Week is a semi-annual open source hackathon which draws 60-120 researchers. As of August 2014, it is a MICCAI endorsed event. The participants work collaboratively on open-science solutions for problems that lie on the interfaces of the fields of computer science, mechanical engineering, biomedical engineering, and medicine. In contrast to conventional conferences and workshops the primary focus of the Project Weeks is to make progress in projects (as opposed to reporting about progress). The objective of the Project Weeks is to provide a venue for this community of medical open source software creators. Project Weeks are open to all, are publicly advertised, and are funded through fees paid by the attendees. Participants are encouraged to stay for the entire event.

Project Week activities: Everyone shows up with a project. Some people are working on the platform. Some people are developing algorithms. Some people are applying the tools to their research problems. We begin the week by introducing projects and connecting teams. We end the week by reporting progress. In addition to the ongoing working sessions, breakout sessions are organized ad-hoc on a variety of special topics. These topics include: discussions of software architecture, presentations of new features and approaches and topics such as Image-Guided Therapy.

Several funded projects use the Project Week as a place to convene and collaborate. These include NAC, NCIGT, QIICR, and OCAIRO.

A summary of all previous Project Events is available here.

Please make sure that you are on the NA-MIC Project Week mailing list

Conference Calls for Preparation

Conference call phone number and notes are available here.

Calendar

The events are listed in the calendar below. Note that due to a current known limitation of our infrastructure, you will need to manually navigate to the week of January 8, 2017 to see the relevant events.


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iCal (.ics) link: https://calendar.google.com/calendar/ical/kitware.com_sb07i171olac9aavh46ir495c4%40group.calendar.google.com/public/basic.ics

Projects

Learning and GPUs

  1. Needle Segmentation from MRI (Ziyang Wang, Guillaume Pernelle, Paolo Zaffino, Tina Kapur)
  2. Deep Learning for Synthetic MRI (Frank Preiswerk, Yaofei "Ada" Wang)
  3. An open-source tool to classify TMJ OA condyles (Priscille de Dumast, Juan Carlos Prieto, Beatriz Paniagua)
  4. DeepInfer: Open-source Deep Learning Deployment Toolkit (Alireza Mehrtash, Mehran Pesteie, Yang (Silvia) Yixin, Tina Kapur, Sandy Wells, Purang Abolmaesumi, Andriy Fedorov)
  5. Evaluate Deep Learning for binary cancer lesion classification (Curt Lisle)

Web Technologies

  1. Web Technology and Slicer (Steve Pieper, Erik Zeigler, Curt Lisle, Satra Ghosh, Hans Meine)
  2. Slicer Qt5 and Python3 (Steve Pieper, Jean-Christophe Fillion-Robin, Andras Lasso, Andrey Fedorov)
  3. OAuth2.0 authentication in SlicerPathology (Erich Bremer, Steve Pieper)
  4. Explore integration of Web-based imaging workflows with Slicer (Curt Lisle, Satra Gosh, Steve Peiper)
  5. IPFS and NoSQL for cloud databases (Hans Meine, Steve Pieper)
  6. Web-based system to federate biological, clinical and morphological data (Juan Carlos Prieto, Clément Mirabel)
  7. Electron App to add, navigate and visualize DICOM images (Smruti Padhy, Satrajit Ghosh, Mathias Goncalves)

IGT: Navigation, Robotics, Surgical Planning

dMRI

Quantitative Imaging Informatics

Visualization

Infrastructure

To be Categorized

Registrants

Do not add your name to this list - it is maintained by the organizers based on your paid registration. To register, visit this registration site.

  1. A, Zeina :: SHBOUL
  2. Aerts, Hugo :: DFCI-Harvard
  3. Alam, Mahbubul :: Old Dominion University
  4. Anderson, Peter :: Retired
  5. Andruejol, Johan :: Kitware, Inc.
  6. Bakeng, Janne Beate :: SINTEF
  7. Beers, Andrew :: Massachusetts General Hospital
  8. Bernal Rusiel, Jorge Luis :: Boston Children's Hospital
  9. Bremer, Erich :: Stony Brook University
  10. Burke, Brice :: American University of Antigua College of Medicine
  11. Cetin Karayumak, Suheyla :: Brigham and Women's Hospital
  12. Chae, Michael :: Monash University
  13. Chauvin, Laurent :: ETS
  14. Dalca, Adrian :: Massachusetts Institute of Technology
  15. Fedorov, Andriy :: Brigham and Women's Hospital
  16. Fillion-Robin, Jean-Christophe :: Kitware, Inc.
  17. Fishbaugh, James :: New York University
  18. Frank, Tobias :: Leibniz Universität Hannover
  19. García Mato, David :: Queen´s University / Universidad Carlos III de Madrid
  20. Girault, Alexis :: Kitware, Inc.
  21. Golland, Polina :: Massachusetts Institute of Technology
  22. Gollub, Randy :: Massachusetts General Hospital
  23. Gong, Shun :: Brigham and Women's Hospital
  24. Guerrier de Dumast, Priscille :: University of Michigan
  25. Harris, Gordon :: Massachusetts General Hospital
  26. Herz, Christian :: Brigham and Women's Hospital
  27. Hong, Sungmin :: New York University
  28. Hosny, Ahmed :: Dana-Farber
  29. Jagadeesan, Jayender :: Brigham and Women's Hospital
  30. Jensen, Henrik G. :: University of Copenhagen
  31. Kapur, Tina :: Brigham and Women's Hospital
  32. Kikinis, Ron :: Brigham and Women's Hospital
  33. Lasso, Andras :: PerkLab, Queen's University
  34. Lauer, Rebekka :: Humboldt University Berlin
  35. Lisle, Curtis :: KnowledgeVis, LLC
  36. Mastrogiacomo, Katie :: Brigham and Women's Hospital
  37. Mateus, D. :: TUM
  38. Mehrtash, Alireza :: Brigham and Women's Hospital
  39. Meine, Hans :: University of Bremen
  40. Meyer, Anneke :: University of Magdeburg
  41. Miller, James :: GE Research
  42. Mirabel, Clement :: University of Michigan
  43. Nitsch, Jennifer :: University of Bremen
  44. Norton, Isaiah :: Brigham and Women's Hospital
  45. O'Donnell, Lauren :: Brigham and Women's Hospital
  46. Oram, Louise :: The Intervention Centre-Oslo University Hospital
  47. Paniagua, Beatriz :: Kitware, Inc.
  48. Parmar, Chintan :: DFCI-Harvard Medical School
  49. Peled, Sharon :: Brigham and Women's Hospital
  50. Pieper, Steve :: Isomics, Inc.
  51. Pinter, Csaba :: Queen's University
  52. Preiswerk, Frank :: Brigham and Women's Hospital/Harvard Medical School
  53. Pujol, Sonia :: Brigham and Women's Hospital/Harvard Medical School
  54. Rankin, Adam :: Robarts Research Institute
  55. Rheault, Francois :: Université de Sherbrooke
  56. Roethe, Anna :: Humboldt University / Charité University Hospital Berlin
  57. Sharp, Gregory :: Massachusetts General Hospital
  58. Sridharan, Patmaa :: University of Pennsylvania-CBICA
  59. Vidyaratne, Lasitha :: Old Dominion University
  60. Wang, Yaofei :: Brigham and Women's Hospital
  61. Westin, Carl-Fredrik :: Brigham and Women's Hospital, Harvard Medical School
  62. Yang, Yixin :: Brigham and Women's Hospital
  63. Ye, Wu :: Brigham and Women's Hospital
  64. Zaffino, Paolo :: Magna Graecia University of Catanzaro, Italy
  65. Zeleznik, Roman :: DFCI
  66. Zhang, Fan :: Brigham and Women's Hospital
  67. Zhang, Miaomiao :: Massachusetts Institute of Technology
  68. Zhang, Yuqian :: Brigham and Women's Hospital
  69. Ziegler, Erik :: Open Health Imaging Foundation/Mass General Hospital
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