Slicer:Workshops:User Training 101
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This is the introductory Slicer 2.6 training material.
Contents
Introduction
You can begin to learn how to
- load and view data
- segment data and create 3D models
- use the DTI and fMRI modules
For an overview, dowload this slideshow
Software Installation
Please install the following software applications and files from the NAMIC site before the course: the current version of the Slicer program appropriate to your platform, the tutorial guide for Slicer, the generic sample data set. This material is located in Slicer 2.6 Getting Started: Software & Sample Data .
Slicer 2 Materials
Contents | Presentation | Data | |
Slicer | |||
Loading and Viewing Data | |||
Manual Segmentation and Model Making | |||
Level-Set Segmentation | |||
Diffusion Tensor Imaging | |||
Functional Magnetic Resonance Imaging | |||
vtkFreeSurferReaders | |||
Saving Data | |||
Nrrd File Format | |||
Dicom to Nrrd Conversion | |||
EMBrainAtlasClassifier | |||
Registration | |||
fMRI Statistical Analysis |
|
Slicer Additional Resources
- SPL PNL Brain Atlas
- IGT Tutorial Materials
- EMSegmenter for multi-channel data and white matter hyperintensities
- Data Fusion and Registration
- Using 3DSlicer in Astronomy
- How to use Slicer with BIRN
- CT based atlas of the abdomen. This data is organized in analogy to the brain atlas above. The zip archive contains a .txt file with the key for the label values and their anatomical meaning.
Feedback and Bug reports
Acknowledgements
- Slicer is being developed by a community of contributors. For more information see the Slicer website.
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