Slicer:Workshops:User Training 101

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This is the introductory Slicer 2.6 training material.

Introduction

You can begin to learn how to

  • load and view data
  • segment data and create 3D models
  • use the DTI and fMRI modules

For an overview, dowload this slideshow

Software Installation

Please install the following software applications and files from the NAMIC site before the course: the current version of the Slicer program appropriate to your platform, the tutorial guide for Slicer, the generic sample data set. This material is located in Slicer 2.6 Getting Started: Software & Sample Data .

Slicer 2 Materials

Contents Presentation Data
Slicer
Loading and Viewing Data

Slicer Training 1

Dataset Training 1

Manual Segmentation and Model Making

Slicer Training 2

Dataset Training 2

Level-Set Segmentation

Slicer Training 3

Dataset Training 3

Diffusion Tensor Imaging

Slicer Training 4

Dataset Training 4.1 Dataset Training 4.2

Functional Magnetic Resonance Imaging

Slicer Training 5

Dataset Training 5.1 Dataset Training 5.2

vtkFreeSurferReaders

Slicer Training 6

Dataset Training 6

Saving Data

Slicer Training 7

Dataset Training 7

Nrrd File Format

Slicer Training 8

Dataset Training 8

Dicom to Nrrd Conversion

Slicer Training 9

Dataset Training 9

EMBrainAtlasClassifier

Slicer Training 10

Dataset Training 10

Registration

Slicer Training 11

Dataset Training 11

fMRI Statistical Analysis

HST.583 Functional Magnetic Resonance Imaging

Tutorial documentation


Slicer Additional Resources

A rendering of the Limbic System from the SPL PNL brain atlas


Feedback and Bug reports

Excerpts from the Slicer 101 courses: Diffusion Tensor Imaging fiber tractography (top); fMRI activation map (lower-left); automatic brain segmentation (lower-right).


Acknowledgements

  • Slicer is being developed by a community of contributors. For more information see the Slicer website.


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