Special topic breakout: Atlases

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Atlases Breakout Session

June 26th, 3-4pm

Location: Grier Rooms A & B: 34-401A & 34-401B

Attendees:

• Gary Christensen
• Wendy Plesniak
• Brad Davis
• Florin Talos
• Michael Halle

Agenda: discuss among the group what topics below of are interest to discuss, and prioritize.

• define Slicer software infrastructure and conventions for atlases
  • Accommodating volumetric and surface based atlases
  • Providing unique identifiers per structure within any atlas
  • Providing a mapping from structure to unique color
  • Providing ability to visually represent related groups of structures (e.g. structures that comprise a single structural or functional system, superstructure, or designated region)
  • Providing mappings from local identifiers to names/IDs in official ontologies, and common synonyms
  • Developing and representing structural and functional relationships
  • Developing tools to perform cross-atlas indexing
  • How would we describe a 'how-to create a slicer atlas' document?
• mapping atlases to individuals for overlaying experimental data or individual imagedata
• interactive tools for displaying labels in various nomenclatures on mouseover
• tools to do both point-based and region-based indexing (useful for brain?)
• tools to display and navigate hierarchical relationships between structures, superstructures and substructures
• compatibility with web-based tools for making queries in anatomical context
• other useful interactive tools?

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