Engineering:Isomics

Accomplishments

• Headed the architecture group for Slicer3
• Implemented MRML3
  • Observer mechanism, Undo/Redo, Save and Restore
• Implemented most of the Slicer3 Base code, including Logic and GUI
  • Volume Coordinates, Reslicing, Compositing, Display, Interaction
  • 3D Viewer, Model Display
• Wrote Modules for Volume and Model Load/Save, Display Properties
• Wrote Editor Module
• Worked closely with other Engineering Core Sites
  • KWWidgets, CPack, Dart, Execution Model, Grid Integration, Pipeline Integration...
• Ongoing Support for Slicer2.x

Earlier Accomplishments

• Taught slicer development courses at BWH, MIT, UCSD, Dartmouth, EPFL...
• Work with Core 3 sites to develop data upload and processing strategies
• Work on ITK/VTK/Slicer integration:
  • Generic Readers module in slicer based on GE code to use ITK IO Fractories
  • Generic image export in slicer based on ITK IO Factories
  • Work on defining patient coordinate system representation in ITK and Slicer NAMIC Coordinate Systems
  • Work on ITK-VTK-Slicer coordinate system transformations
  • Integration of teem and nrrd formats into slicer for DWI and Tensors
  • Work with UNC to test ITK Spatial Objects and Spatial Object Visualizers in slicer
  • Integration of ITK based filters and segmentation routine in slicer
  • Created ITK based image Registration Framework and modules including:
    • Rigid transformation registration
    • Affine transformation registration
    • Deformable Demons registration
    • Deformable BSpline registration
  • Created TransformVolume slicer module for general porpose resampling of volumes
• Work on Slicer 2.5 and 2.6 releases (bug fixes, testing, etc)
• Work on Slicer3 architecture Slicer Roadmap Nov 2005 also project progress and ideas.
• Work on IGT/IGSTK/Slicer3 integration discussions and implementations
• Work with new sites on application on NA-MIC Kit software and collaboration proposals (where appropriate)