SCIRun Scripts on SPL Machines

High-Throughput SCIRun Scripts on SPL Machines

SCIRun scripts running SCIRun -E in bash were initially not working despite SCIRun building fine and all the manual nets working. The script nets and manual nets are in theory the same except for paths etc. Ultimately trashing the /SCIRun folder containing "on-the-fly-libs" and "tmp" in entirety and then deleting ".scrirunrc" and letting SCIRun regenerate both allowed the scripts to run. Note thse files are not in the SCIRun svn directory such as "/trunk/" etc, but created the first time you run SCIRun, usually in your ~/ directory unless you specify otherwise. This should not be an issue if you have never run SCIRun on a machine before, but might be if you have ever run SCIRun prior on a given machine.

Simply deleting and regenerating "on-the-fly-libs" and ".scirunrc did" not work. The entire "SCIRun folder", then ".scirunrc" needed to both be deleted and then SCIRun run. I am not sure why the scripts are more sensitive to this. A hint to need to do this would be if it brings up screen every time it tries to update ".scirunrc" everytime a new SCIRun is opened in the script, or if your nets called by a script simply don't run, when the manual ones do.