Support for Batch Processing

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Home < Support for Batch Processing

Objective:

To develop a command liner interface for the BRAINS3 project that will support batch processing with no graphical user interface.

Possible scripting languages

  • TCL
  • Python

Progress:

  • The BRAINS3 build system is being updated that will allow for integration of ITK, VTK, Slicer3, and BRAINS3 TCL command lines within a single executable. Adapters will then need to be written to pass data between these systems.
  • ITK-VTK already exists with WrapITK wrapping.
  • BRAINS3-ITK exists and needs to be wrapped with WrapITK.
  • Need to determine how to get Data into slicer from VTK or ITK.

Key Investigators:

  • University of Iowa: Vincent Magnotta, Hans Johnson, Nancy Andreasen
  • The MIND Institute: Jeremy Bockholt


Links:

Papers:

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