2008 Winter Project Week Tractography
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Tractography Validation Beadeker
- 9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting tractography methods see this page for background
- 9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update Morphometry BIRN DTI calibration
- 9:25am: Randy Gollub, MIND Reliability dataset goals Impact of using MIND data for this project
Algorithm specific presentations
- 9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
- 9:45 Sylvain Gouttard (Utah) FiberViewer
- 9:55 Casey Goodlett (Utah) DTI Atlas
- 10:05 John Melonakos (Georgia Tech) Geodesic Tractography Segmentation (slides)
- 10:15 Vince Magnotta (UIowa) GTract
- 10:25 Tom Fletcher (Utah) Volumetric Connectivity
10:35am: Coffee break
- 11:00 Tri Ngo (MIT/BWH) Stochastic Tractography
- 11:10 Sonia Pujol (BWH) Cross algorithm summary statistics
Discussion, future planning
- 11:25 CF Westin to kick-off discussion of Tractography results with summarizing ideas. Meeting Notes
12:00pm: Lunch
- 1:00- 1:20pm Presentation of current status of Slicer 3 DTI infrastructure (Alex Yarmarkovich)Slicer3 DTI status
- 1:20-1:30pm Dan Marcus to gather requirements to post this dataset for consideration of whether this is an XNATophilic project
- 1:30- 3:00pm Continue discussion of Tractography results with focus on:
- Data formats and coordinate system requirements/guidelines/recommendations
- Quality control methods and implementation
- ROIs: what works, what doesn't, what to do?
- Registration &/or resampling to support visit 1- visit 2 analysis and group analysis
- Freesurfer to B0 transform for white matter mask
- Quantification of registration error and its propagation forward and impact on final results
- Plans for data sharing curation and timeline (integration with XNAT project, should we make plans for a NAMIC sponsored MICCAI event: Tractography Grand Challenge e.g. the one done last year for segmentation? See http://mbi.dkfz-heidelberg.de/grand-challenge2007/)
- Outcome metrics and how to best frame scientific questions for this project, steps towards manuscript preparation, milestones for spring 2008 and for Programming Week in June
3pm: coffee break
- 3-4PM Batchmake break-out session
- 4:00pm Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk).
- Identify and agree upon essential processing steps (pipeline) necessary for clinical DTI studies
- Identify Core-1 modules and methods that are a) recently integrated, b) ready to be integrated, c) in development
- Integrate with other on-going efforts
- 4:00pm Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development, keeping in mind the work already done by Alex (see 1 PM talk).
