Training:NLM Workshop 2006

Organization

NIH Host:

• TBD

NA-MIC Lead:

• Sonia Pujol

Training Workshop Participants

Clinicians and biomedical science researchers interested in training in 3DSlicer, an open-source software for visualization and analysis of medical imaging data.

Training Workshop Logistics

• To sign-up for this event, send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu) with your contact information, the characteristics of the computer you will be using for the workshop (OS, RAM, Processor), and any specific training requests.
• The workshop will be held on July 19 at the National Institutes of Health in Bethesda, MD. Location to be determined shortly.

Preparation for the Training Workshop -- Important Information for all attendees

All participants must come with their own PC, Linux or MacOS 10.4 laptop computer. Please complete the following items prior to the workshop. Support will be provided as requested.

• Software Installation: Please install the newest version of the Slicer program Slicer2.6 appropriate to the computer you will be bringing to the workshop.
• Data to Download: Please install the tutorial data tutorial-with-dicom.zip.

Draft Agenda 9:00 AM - 5:00 PM

• 9:00 am - 9:30 am Goals of Workshop, Introduction to the NAMIC Kit - People-Introductions (Sonia Pujol)
• 9:30 am - 9:45 am Preliminary session: checking for software and data installation.
• 9:45 am - 11:00 am Slicer Basics - Hands-on Session 1 (Sonia Pujol)
  • Slicer Interface Overview
  • Loading Data: Volumes, Models, Scenes
  • Interacting with Images and Models
• 11:00 am - 11:15 am Coffee-break
• 11:15 am - 12:15 pm Slicer Basics - Hands-on Session 2 (Sonia Pujol)
  • Saving Volumes
  • Saving Models
  • Saving Scenes
• 12:15 pm - 1:30 pm Lunch Break
• 1:30 pm - 4:00 pm Slicer Advanced - Hands-on Session 3 (Sonia Pujol)
  • Nrrd file format
  • Diffusion Tensor Imaging
• 4:00 pm - 4:15 pm Coffee-break
• 4:15 pm - 4:45 pm Users Feedback
• 4:45 pm - 5:00 pm Overview of Slicer 3.0 and Conclusion