Events:Slicer Workshop August 2009
Course Syllabus
The purpose of this workshop is to provide the members of the research community with a practical experience of the image processing, 3D visualization, and Image-Guided Therapy capabilities of the Slicer software platform.
Course Faculty
- Sonia Pujol, Ph.D., Instructor in Radiology, Harvard Medical School
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
- Noby Hata, Ph.D, Assistant Professor in Radiology, Harvard Medical School
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
- Kathryn Hayes, M.S.E.
Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
Logistics
- Date: Tuesday, August 25, 2009
- Time: 9am - 4pm
- Location: 1249 Boylston Street, Boston MA
- Participants are required to come with their own computer (PC, Linux or MacOS).
Directions
- Loading and visualizing anatomical MRI data
- Incorporating fMRI data using image
registration and thresholding
- Creating a 3D model of the tumour volume
- 3:00 am - 3:15 am Coffee-break
- Module 4-6 (3:15-4:40)
- Predicting the locations of brain structures using
image registration and a brain atlas
- Incorporating brain fiber tractography from
diffusion weighted images
- Annotating the preoperative plan and saving the
scene
Preparation for the Workshop
Please complete the following items prior to the course. Support will be provided as requested
- Software Installation: Please install the newest Slicer3 release appropriate to the computer you will be bringing to the workshop:
- Windows: Slicer3-3.2.2008-08-08-win32.exe
- Mac OSX Darwin PPC: Slicer3-3.2.2008-08-08-darwin-ppc.tar.gz
- Mac OSX Darwin Intel: Slicer3-3.2.2008-08-08-darwin-x86.tar.gz
- Linux x86 Slicer3-3.2.2008-08-08-linux-x86.tar.gz
- Linux x86-64 Slicer3-3.2.2008-08-08-linux-x86_64.tar.gz
The instructions for installing the Slicer3 program describe the different steps of the procedure on Mac OS, Linux and Windows.
Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.
- Data to download: Please install the tutorial dataset SlicerSampleVisualization.tar.gz.
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