Proposed work pipeline

1. Ginger: produce ICC mask for chosen template: Gucci
2. Andriy: use BRAINSfit to align all other sbjects to template through Affine + BSpline
3. Ginger: compute average of the aligned subjects and manual separate to GM, WM + CSF
4. Ron: manually segment sub-cortical structures.
5. Ginger: produce Slicer3 module for back propagation and manual correct the results
6. Ginger: smooth back propagation results to generate final templates
7. Andriy: register atlas to each subjects and apply resulting transformation to align atlas to each subjects
8. Ginger: finalize by EM segmentation.

Meanwhile: Ginger will perform EM segmentation on Gucci to separate into WM, GM, CSF and Ron helps to segment sub-cortical structures.