CCA:Atlases:MRI Brain Atlas 2010:ColorFile
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Title
NAC CCA Core 2010 MRI Brain Atlas
Description
This file contains the label information for the 2010 MRI Brain Atlas from the NAC CCA Core.
Credits
- Authors
- Ion-Florin Talos MD
- Michael Halle PhD
- Institutions
- Center for Computational Anatomy Core, Neuroimage Analysis Center, Surgical Planning Lab, Brigham and Women's Hospital
- Grants
- Neuroimage Analysis Center (NAC), National Institutes of Health (NIH), National Center for Research Resources (NCRR), NIH P41 RR13218.
- Creation Date
- 02/16/2009
Imports
Lookup table information can be imported from other pages by adding links to those pages in a section like this one named "Imports".
The atlas doesn't currently import any such files.
Lookup table information
Any tables defined with class "labelpagetable" in the wiki markup will be interpreted as part of the color file description. The information in the tables are concatenated. For color file construction, the tables need to have columns named "integer_label", "text_label", and "color". These columns can appear in any order. Other columns can be included (for example, "notes").
Multiple tables can be used to organize large sets of labels for efficient viewing and editing.
The "color" column uses either CSS3-type color descriptions or raw integer values to describe the red, green, blue, and possibly alpha values of the color.
Non-anatomic entities
| integer_label | text_label | color | notes |
|---|---|---|---|
| 0 | background | rgb(0,0,0) | The background label is included here because it isn't an anatomical structure. |
Atlas lookup table
| id | integer_label | text_label | color | radlex_id | notes |
|---|---|---|---|---|---|
| int2 | 2 | white matter of left cerebral hemisphere | rgb(245,245,245) | RID16998 | |
| int4 | 4 | left lateral ventricle | rgb(120,18,134) | RID13789 | |
| int5 | 5 | temporal horn of left lateral ventricle | rgb(196,58,250) | RID13803 | |
| int7 | 7 | white matter of cerebellum left | rgb(221,248,164) | RID17313 | |
| int8 | 8 | left cerebellar cortex | rgb(230,148,34) | RID15574 | |
| int10 | 10 | left thalamus | rgb(0,118,14) | RID13496 | |
| int11 | 11 | left caudate nucleus | rgb(122,186,220) | RID21020 | |
| int12 | 12 | left putamen | rgb(236,13,176) | RID21015 | |
| int13 | 13 | left globus pallidus pars externa | rgb(12,48,255) | RID18433 | |
| int14 | 14 | wall of third ventricle | rgb(204,182,142) | RID13826 | |
| int15 | 15 | fourth ventricle | rgb(42,204,164) | RID7147 | |
| int17 | 17 | left hippocampus | rgb(220,216,20) | RID26565 | |
| int18 | 18 | left amygdala | rgb(103,255,255) | RID15698 | |
| int24 | 24 | third ventricle (1) | rgb(60,60,60) | RID7137 | |
| int25 | 25 | left globus pallidus pars interna | rgb(255,165,0) | RID18436 | |
| int26 | 26 | left nucleus accumbens | rgb(165,0,255) | RID21022 | |
| int27 | 27 | left middle cerebellar peduncle | rgb(0,255,127) | RID18080 | |
| int28 | 28 | left hypothalamus | rgb(165,42,42) | RID6639 | |
| int34 | 34 | left superior cerebellar peduncle | rgb(122,135,50) | RID18078 | |
| int35 | 35 | pons | rgb(51,50,135) | RID6728 | |
| int40 | 40 | midbrain | rgb(205,62,78) | RID6768 | |
| int41 | 41 | white matter of right cerebral hemisphere | rgb(0,225,0) | RID16997 | |
| int43 | 43 | right lateral ventricle | rgb(120,18,134) | RID13788 | |
| int44 | 44 | temporal horn of right lateral ventricle | rgb(196,58,250) | RID13802 | |
| int46 | 46 | white matter of cerebellum right | rgb(220,248,164) | RID17312 | |
| int47 | 47 | right cerebellar cortex | rgb(230,148,34) | RID15573 | |
| int49 | 49 | right thalamus | rgb(0,118,14) | RID13495 | |
| int50 | 50 | right caudate nucleus | rgb(122,186,220) | RID21019 | |
| int51 | 51 | right putamen | rgb(236,13,176) | RID21014 | |
| int52 | 52 | right globus pallidus pars externa | rgb(13,48,255) | RID18433 | |
| int53 | 53 | right hippocampus | rgb(220,216,20) | RID26564 | |
| int54 | 54 | right amygdala | rgb(103,255,255) | RID15699 | |
| int55 | 55 | right insula | rgb(80,196,98) | RID13870 | |
| int58 | 58 | right nucleus accumbens | rgb(255,165,0) | RID21021 | |
| int60 | 60 | right hypothalamus | rgb(165,42,42) | RID6639 | |
| int61 | 61 | medulla oblongata | rgb(135,206,235) | RID6681 | |
| int63 | 63 | choroid plexus of right lateral ventricle | rgb(0,200,221) | RID27792 | |
| int66 | 66 | left substantia nigra | rgb(122,135,50) | RID20742 | |
| int71 | 71 | right substantia nigra | rgb(122,135,50) | RID20741 | |
| int72 | 72 | pineal body | rgb(120,190,150) | RID6576 | |
| int78 | 78 | left optic tract | rgb(255,148,10) | RID22698 | |
| int79 | 79 | left red nucleus | rgb(255,148,10) | RID20702 | |
| int84 | 84 | right red nucleus | rgb(255,218,185) | RID20701 | |
| int85 | 85 | optic chiasm | rgb(234,169,30) | RID6641 | |
| int96 | 96 | pellucid septum | rgb(205,10,125) | RID6525 | |
| int100 | 100 | left mammillothalamic tract | rgb(124,140,178) | RID17563 | |
| int142 | 142 | anterior commissure | rgb(221,226,68) | RID6911 | |
| int200 | 200 | right mammillothalamic tract | rgb(0,50,128) | RID17563 | |
| int216 | 216 | right optic tract | rgb(255,204,102) | RID22697 | |
| int1000 | 1000 | left insula | rgb(125,5,25) | RID13871 | |
| int1001 | 1001 | left superior temporal gyrus (1) | rgb(25,100,40) | RID13889 | |
| int1002 | 1002 | left cingulate gyrus (1) | rgb(125,100,160) | RID26841 | |
| int1003 | 1003 | left middle frontal gyrus (1) | rgb(100,25,0) | RID13908 | |
| int1005 | 1005 | left cuneus | rgb(220,20,100) | RID26552 | |
| int1006 | 1006 | left ambiens gyrus | rgb(220,20,10) | RID26595 | |
| int1007 | 1007 | left fusiform gyrus | rgb(180,220,140) | RID26541 | |
| int1008 | 1008 | left inferior parietal lobule | rgb(220,60,220) | RID14108 | |
| int1009 | 1009 | left inferior temporal gyrus | rgb(180,40,120) | RID13893 | |
| int1010 | 1010 | left cingulate gyrus (2) | rgb(140,20,140) | RID20384 | |
| int1011 | 1011 | left lateral occipital gyrus | rgb(20,30,140) | RID13938 | |
| int1012 | 1012 | left orbital gyri | rgb(35,75,50) | RID26524 | |
| int1013 | 1013 | left lingual gyrus | rgb(225,140,140) | RID20359 | |
| int1014 | 1014 | left straight gyrus | rgb(200,35,75) | RID20290 | |
| int1015 | 1015 | left middle temporal gyrus | rgb(160,100,50) | RID20312 | |
| int1017 | 1017 | left paracentral lobule | rgb(20,220,60) | RID27593 | |
| int1018 | 1018 | opercular part of left inferior frontal gyrus | rgb(60,220,60) | RID22705 | |
| int1019 | 1019 | orbital part of left inferior frontal gyrus | rgb(220,180,140) | RID22708 | |
| int1020 | 1020 | triangular part of left inferior frontal gyrus | rgb(220,60,20) | RID22702 | |
| int1021 | 1021 | left visual cortex | rgb(120,100,60) | RID26416 | |
| int1022 | 1022 | left postcentral gyrus | rgb(220,20,20) | RID20334 | |
| int1023 | 1023 | left cingulate gyrus (1) | rgb(220,180,220) | RID20378 | |
| int1024 | 1024 | left precentral gyrus | rgb(60,20,220) | RID20275 | |
| int1025 | 1025 | left precuneus | rgb(160,140,180) | RID20346 | |
| int1026 | 1026 | left cingulate gyrus (3) | rgb(80,20,140) | RID26838 | |
| int1027 | 1027 | left middle frontal gyrus (2) | rgb(75,50,125) | RID26832 | |
| int1028 | 1028 | left superior frontal gyrus (1) | rgb(20,220,160) | RID20269 | |
| int1029 | 1029 | left superior parietal lobule and precuneus | rgb(20,180,140) | RID20346;RID20343 | |
| int1030 | 1030 | left superior temporal gyrus | rgb(140,220,220) | RID20309 | |
| int1031 | 1031 | left angular and supramarginal gyrus | rgb(80,160,20) | RID20337;RID20340 | |
| int1032 | 1032 | left frontal pole | rgb(100,0,100) | RID26767 | |
| int1033 | 1033 | left temporal pole | rgb(70,70,70) | RID26770 | |
| int1034 | 1034 | left transverse temporal gyri | rgb(150,150,200) | RID20330 | |
| int2000 | 2000 | right insula | rgb(125,5,125) | RID13870 | |
| int2001 | 2001 | right superior temporal gyrus (2) | rgb(25,100,40) | RID20308 | |
| int2003 | 2003 | right middle frontal gyrus (1) | rgb(100,25,0) | RID26834 | |
| int2005 | 2005 | right cuneus | rgb(220,20,100) | RID20355 | |
| int2006 | 2006 | right parahippocampal gyrus | rgb(220,20,10) | RID20305 | |
| int2007 | 2007 | right fusiform gyrus | rgb(180,220,140) | RID20317 | |
| int2008 | 2008 | right angular and supramarginal gyri | rgb(220,60,220) | RID15673 | |
| int2009 | 2009 | right inferior temporal gyrus | rgb(180,40,120) | RID20314 | |
| int2010 | 2010 | right cingulate gyrus (2) | rgb(140,20,140) | RID20383 | |
| int2011 | 2011 | right lateral occipital gyrus | rgb(20,30,140) | RID20352 | |
| int2012 | 2012 | right orbital gyri (1) | rgb(35,75,50) | RID20292 | |
| int2013 | 2013 | right lingual gyrus | rgb(225,140,140) | RID20358 | |
| int2014 | 2014 | right straight gyrus | rgb(200,35,75) | RID20277 | |
| int2015 | 2015 | right middle temporal gyrus | rgb(160,100,50) | RID20311 | |
| int2017 | 2017 | right paracentral lobule | rgb(60,220,60) | RID27592 | |
| int2018 | 2018 | opercular part of right inferior frontal gyrus | rgb(220,180,140) | RID22704 | |
| int2019 | 2019 | orbital part of right inferior frontal gyrus | rgb(20,100,50) | RID22707 | |
| int2020 | 2020 | triangular part of right inferior frontal gyrus | rgb(220,60,20) | RID22701 | |
| int2021 | 2021 | right visual cortex | rgb(120,100,60) | RID26415 | |
| int2022 | 2022 | right postcentral gyrus | rgb(220,20,20) | RID20333 | |
| int2023 | 2023 | right cingulate gyrus (1) | rgb(220,180,220) | RID20377 | |
| int2024 | 2024 | right precentral gyrus | rgb(60,20,220) | RID20274 | |
| int2025 | 2025 | right precuneus | rgb(160,140,180) | RID20345 | |
| int2027 | 2027 | right middle frontal gyrus (1) | rgb(75,50,125) | RID26831 | |
| int2028 | 2028 | right superior frontal gyrus | rgb(20,220,160) | RID20268 | |
| int2029 | 2029 | right superior parietal lobule | rgb(20,180,140) | RID20342 | |
| int2030 | 2030 | right superior temporal gyrus (3) | rgb(140,220,220) | RID20308 | |
| int2031 | 2031 | right supramarginal gyrus | rgb(80,160,20) | RID20336 | |
| int2032 | 2032 | right frontal pole | rgb(100,0,100) | RID26766 | |
| int2033 | 2033 | right temporal pole | rgb(70,70,70) | RID26769 | |
| int2034 | 2034 | right transverse temporal gyri | rgb(150,150,200) | RID20329 | |
| int2108 | 2108 | right angular and supramarginal gyri | rgb(230,250,230) | RID22701 | |
| int3000 | 3000 | right claustrum | rgb(230,250,230) | RID15701 | |
| int3001 | 3001 | left claustrum | rgb(230,155,215) | RID15700 | |
| int3002 | 3002 | right mamillary body | rgb(130,155,95) | RID26776 | |
| int3003 | 3003 | left mamillary body | rgb(155,230,255) | RID26777 | |
| int3004 | 3004 | corpus callosum | rgb(135,185,205) | RID6915 | |
| int3005 | 3005 | right fornix of forebrain | rgb(35,235,155) | RID18106 | |
| int3007 | 3007 | left fornix of forebrain | rgb(75,35,115) | RID18107 | |
| int3008 | 3008 | infundibulum of neurohypophysis | rgb(35,195,35) | RID15529 | |
| int3011 | 3011 | adenohypophysis | rgb(235,225,115) | RID15522 | |
| int3012 | 3012 | neurohypophysis | rgb(220,180,205) | RID6645 |
Thalamic Nuclei Expansion
| integer_label | text_label | color | notes |
|---|---|---|---|
| 500 | internal medullar lamina R | rgb(200,200,200) | |
| 501 | internal medullar lamina L | rgb(200,200,200) | |
| 502 | medial geniculate body R | rgb(125,250,21) | |
| 503 | medial geniculate body L | rgb(125,250, 21) | |
| 504 | lateral geniculate body R | rgb(102,178,255) | |
| 505 | lateral geniculate body L | rgb(102,178,255) | |
| 506 | pulvinar R | rgb(63,104,224) | |
| 507 | pulvinar L | rgb(63,104,224) | |
| 508 | anterior thalamic nucleus R | rgb(255,25,127) | in the old SPL-BrainAtlas-Colorfile.txt L and R are mislabeled (switched) |
| 509 | anterior thalamic nucleus L | rgb(255,25,127) | in the old SPL-BrainAtlas-Colorfile.txt L and R are mislabeled (switched) |
| 510 | dorsomedial thalamic nucleus R | rgb(60,189,130) | |
| 511 | dorsomedial thalamic nucleus L | rgb(60,189,130) | |
| 512 | centromedian thalamic nucleus R | rgb(188,181,105) | |
| 513 | centromedian thalamic nucleus L | rgb(188,181,105) | |
| 514 | ventral anterior thalamic nucleus R | rgb(254,213,0) | |
| 515 | ventral anterior thalamic nucleus R | rgb(254,213,0) | |
| 516 | ventral lateral thalamic nucleus R | rgb(60,180,180) | |
| 517 | ventral lateral thalamic nucleus L | rgb(60,180,180) | |
| 518 | lateral posterior thalamic nucleus R | rgb(204,127,0) | |
| 519 | lateral posterior thalamic nucleus L | rgb(204,127,0) | |
| 520 | lateral dorsal thalamic nucleus R | rgb(175,194,221) | |
| 521 | lateral dorsal thalamic nucleus L | rgb(175,194,221) | |
| 522 | VPM thalamic nucleus R | rgb(225,167,104) | |
| 523 | VPM thalamic nucleus L | rgb(225,167,104) | |
| 524 | VPL thalamic nucleus R | rgb(229,127,127) | |
| 525 | VPL thalamic nucleus L | rgb(229,127,127) |
