Events:2011-06-15-Robarts-Slicer-Workshop

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Introduction

A Slicer tutorial will be hosted by the Biomedical Imaging Research Centre (BIRC) of the University of Western Ontario, London, Canada, on Wednesday, June 15, 2011. The primary objective of this event is to introduce users to the Slicer environment, as well as to illustrate the ability to integrate with ITK and Python modules. The concept of interfacing Slicer with imaging and tracking systems using Open IGTLink will also be discussed. The event will be held in Room MSB 148, Schulich School of Medicine and Dentistry, University of Western Ontario. This course will be followed at 5:30pm by a BIRC Seminar "Open Source Platforms for Collaborative Research - Examples from 3D Slicer" delivered by Dr Ron Kikinis. The seminar will take place in Auditorium A of University Hospital, on the University campus.

Faculty

Tentative Agenda

  • 8:00-8:25 am Computer setup assistance by the instructors
  • 8:25-8:30 am Welcome and presentation of day activities (Ron Kikinis)
  • 8:30-9:45 am Hands-on session 1: Data Loading and 3D Visualization (Sonia Pujol)
  • 9:45-10:15 am Coffee Break
  • 10:15-11:15 am Hands-on session 2: Registration and resampling using Brainsfit: Rigid, Affine and Non-rigid (Danielle Pace)
  • 11:15-12:30 Hands-on session 3: White Matter Exploration for Surgical Planning (Sonia Pujol)
  • 12:30-13:30 Lunch Break
  • 13:30-14:45 Hands-on session 4: Adding Python based modules to Slicer: The Hello Python Programming Tutorial (Sonia Pujol)
  • 14:45-15:30 Hands-on session 5: OpenIGTLink: Interfacing Slicer to devices (Junichi Tokuda)
  • 15:30-15:45 Coffee Break
  • 15.45-16:30 Demonstration of Slicer4 and the Skeletongenerator (Junichi Tokuda)
  • 16:15-16:30 Questions from the audience and concluding remarks
  • 17:30-19:00 BIRC Lecture: Ron Kikinis, MD: 3D Slicer "Open Source Platforms for Collaborative Research - Examples from 3D Slicer."
    Location: Auditorium A, University Hospital.

Logistics

  • Date: June 15, 2011
  • Workshop Location: Room MSB 148, Schulich School of Medicine and Dentistry, University of Western Ontario Clear here for the campus map
  • BIRC Seminar location: Auditorium A, University Hospital, on the University campus
  • Registration: To sign-up for this event, please fill in the registration form and send it by e-mail to Katie Mastrogiacomo (kmast at bwh.harvard.edu) before June 7.

Room Configuration - Fisher Conference Room

24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power.

Preparations

  • Hardware The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.

All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.

  • Datasets: Datasets will be available for download a few weeks before the event.

Slicer Community

Participants are invited to join the Slicer user and Slicer developer community prior to the workshop, for questions and feature requests related to the software.

For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu).

Slicer3 Training Survey

Click here to take the Slicer3 Training Survey

Registrants

  1. Ron Kikinis, SPL
  2. Kamyar Abhari, Robarts
  3. Mariam Afshin, UWO
  4. Ali Asadian, UWO
  5. Joseph Awad, Robarts
  6. Adam Blais, Robarts
  7. Susan Buchanan, Robarts
  8. Derek Cool, Robarts
  9. Stephen Costella, Robarts
  10. Andrew Curtis, Robarts
  11. Tharindu De Silva, Robarts
  12. John Drozd, Robarts
  13. Abelardo Escoto, CSTAR
  14. Lori Gardi, UWO
  15. Eli Gibson, Robarts
  16. Maged Goubran, Robarts
  17. Samaneh Kazemifar, Robarts
  18. Jeff Kempe, LHSC
  19. Iman Khalaji, UWO
  20. Miranda Kirby, Robarts
  21. Pencilla Lang, UWO
  22. Feng Li, Robarts
  23. Hao Li, CSTAR
  24. Harry Marshall, LRHI
  25. Lindsay Mathew, Robarts
  26. Michael Naish, UWO
  27. Nima Najmaei, UWO
  28. Hamid Neshat, Robarts
  29. Haroon Oqab, UWO
  30. Amir Owrangi, Robarts
  31. Grace Parraga, UWO
  32. Ivailo Petrov, Robarts
  33. Brendan Santyr, Robarts
  34. Maysam Shahedi, Robarts
  35. Arefin Shamsil, UWO
  36. Harish Sharma, UWO
  37. Igor Solovey, Robarts
  38. Feng Su, UWO
  39. Sarah Svenningsen, Robarts
  40. Ali Tavallaei, Robarts
  41. Jian Wang, UWO
  42. Aaron Ward, UWO
  43. Andrew Wheatley, Robarts
  44. Kevin Yang, Robarts
  45. Timothy Yeung, UWO


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