Events:2011-06-15-Robarts-Slicer-Workshop

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Introduction

A Slicer tutorial will be hosted by the Biomedical Imaging Research Centre (BIRC) of the University of Western Ontario, London, Canada, on Wednesday, June 15, 2011. The primary objective of this event is to introduce users to the Slicer environment, as well as to illustrate the ability to integrate with ITK and Python modules. The concept of interfacing Slicer with imaging and tracking systems using Open IGTLink will also be discussed. The event will be held in Room MSB 148, Schulich School of Medicine and Dentistry, University of Western Ontario. This course will be followed at 5:30pm by a BIRC Seminar "Open Source Platforms for Collaborative Research - Examples from 3D Slicer" delivered by Dr Ron Kikinis. The seminar will take place in Auditorium A of University Hospital, on the University campus.

Faculty

Tentative Agenda

  • 8:00-8:25 am Computer setup assistance by the instructors
  • 8:25-8:30 am Welcome and presentation of day activities (Ron Kikinis)
  • 8:30-9:45 am Hands-on session 1: Data Loading and 3D Visualization (Sonia Pujol)
  • 9:45-10:15 am Coffee Break
  • 10:15-11:15 am Hands-on session 2: Registration and resampling using Brainsfit: Rigid, Affine and Non-rigid (Danielle Pace)
  • 11:15-12:30 Hands-on session 3: White Matter Exploration for Surgical Planning (Sonia Pujol)
  • 12:30-13:30 Lunch Break
  • 13:30-14:45 Hands-on session 4: Adding Python based modules to Slicer: The Hello Python Programming Tutorial (Sonia Pujol)
  • 14:45-15:30 Hands-on session 5: OpenIGTLink: Interfacing Slicer to devices (Junichi Tokuda)
  • 15:30-15:45 Coffee Break
  • 15.45-16:30 Demonstration of Slicer4 and the Skeletongenerator (Junichi Tokuda)
  • 16:15-16:30 Questions from the audience and concluding remarks
  • 17:30-19:00 BIRC Lecture: Ron Kikinis, MD: 3D Slicer "Open Source Platforms for Collaborative Research - Examples from 3D Slicer."
    Location: Auditorium A, University Hospital.

Logistics

  • Date: June 15, 2011
  • Workshop Location: Room MSB 148, Schulich School of Medicine and Dentistry, University of Western Ontario Clear here for the campus map
  • BIRC Seminar location: Auditorium A, University Hospital, on the University campus
  • Registration: To sign-up for this event, please fill in the registration form and send it by e-mail to Katie Mastrogiacomo (kmast at bwh.harvard.edu) before June 7.

Room Configuration - Fisher Conference Room

24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power.

Preparations

  • Hardware The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.

All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.

Slicer Community

Participants are invited to join the Slicer user and Slicer developer community prior to the workshop, for questions and feature requests related to the software.

For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu).

Slicer3 Training Survey

Click here to take the Slicer3 Training Survey

Registrants

  1. Kamyar Abhari, Robarts
  2. Mariam Afshin, UWO
  3. Ali Asadian, UWO
  4. Joseph Awad, Robarts
  5. Mahdi Azizian, CSTAR
  6. Adam Blais, Robarts
  7. Susan Buchanan, Robarts
  8. Daniel Cho , Robarts
  9. Derek Cool, Robarts
  10. Stephen Costella, Robarts
  11. Andrew Curtis, Robarts
  12. Tharindu De Silva, Robarts
  13. Ryan Divigalpitiya, UWO/Baines Center for Translational Cancer Research
  14. Maria Drangova, Robarts
  15. John Drozd, Robarts
  16. Abelardo Escoto, CSTAR
  17. Lori Gardi, UWO
  18. Eli Gibson, Robarts
  19. Maged Goubran, Robarts
  20. Reza Heydarian, Robarts
  21. Samaneh Kazemifar, Robarts
  22. Jeff Kempe, LHSC
  23. Iman Khalaji, UWO
  24. Miranda Kirby, Robarts
  25. Pencilla Lang, UWO
  26. Fraser Le Ber, CSTAR
  27. Feng Li, Robarts
  28. Hao Li, CSTAR
  29. Harry Marshall, LRHI
  30. Lindsay Mathew, Robarts
  31. Michael Naish, UWO
  32. Nima Najmaei, UWO
  33. Hamid Neshat, Robarts
  34. Haroon Oqab, UWO
  35. Amir Owrangi, Robarts
  36. Grace Parraga, UWO
  37. Ivailo Petrov, Robarts
  38. Brendan Santyr, Robarts
  39. Maysam Shahedi, Robarts
  40. Arefin Shamsil, UWO
  41. Harish Sharma, UWO
  42. Igor Solovey, Robarts
  43. Feng Su, UWO
  44. Sarah Svenningsen, Robarts
  45. Ali Tavallaei, Robarts
  46. Jian Wang, UWO
  47. Aaron Ward, UWO
  48. Andrew Wheatley, Robarts
  49. Kevin Yang, Robarts
  50. Timothy Yeung, UWO


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