Events:2011-06-15-Robarts-Slicer-Workshop

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Introduction

A Slicer tutorial will be hosted by the Biomedical Imaging Research Centre (BIRC) of the University of Western Ontario, London, Canada, on Wednesday, June 15, 2011. The primary objective of this event is to introduce users to the Slicer environment, as well as to illustrate the ability to integrate with ITK and Python modules. The concept of interfacing Slicer with imaging and tracking systems using Open IGTLink will also be discussed. The event will be held in Room MSB 148, Schulich School of Medicine and Dentistry, University of Western Ontario. This course will be followed at 5:30pm by a BIRC Seminar "Open Source Platforms for Collaborative Research - Examples from 3D Slicer" delivered by Dr Ron Kikinis. The seminar will take place in Auditorium A of University Hospital, on the University campus.

Faculty

  • Ron Kikinis, M.D., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
  • Sonia Pujol, Ph.D. Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
  • Junichi Tokuda, Ph.D. Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
  • Danielle Pace, M.ESc, Kitware Inc., Chapel Hill, NC

Local Organizer

Agenda

  • 8:00-8:25 am Computer setup assistance by the instructors
  • 8:25-8:30 am Welcome and presentation of day activities (Ron Kikinis)
  • 8:30-9:45 am Hands-on session 1: Data Loading and 3D Visualization (Sonia Pujol)
  • 9:45-10:15 am Coffee Break
  • 10:15-11:15 am Hands-on session 2: Registration and resampling using Brainsfit: Rigid, Affine and Non-rigid (Danielle Pace)
  • 11:15-12:30 Hands-on session 3: White Matter Exploration for Surgical Planning (Sonia Pujol)
  • 12:30-13:30 Lunch Break
  • 13:30-14:45 Hands-on session 4: Adding Python based modules to Slicer: The Hello Python Programming Tutorial (Sonia Pujol)
  • 14:45-15:30 Hands-on session 5: OpenIGTLink: Interfacing Slicer to devices (Junichi Tokuda)
  • 15:30-15:45 Coffee Break
  • 15.45-16:30 Demonstration of Slicer4 and the Skeletongenerator (Junichi Tokuda)
  • 16:15-16:30 Questions from the audience and concluding remarks
  • 17:30-19:00 BIRC Lecture: Ron Kikinis, MD: 3D Slicer "Open Source Platforms for Collaborative Research - Examples from 3D Slicer."
    Location: Auditorium A, University Hospital.

Logistics

  • Date: June 15, 2011
  • Workshop Location: Room MSB 148, Schulich School of Medicine and Dentistry, University of Western Ontario Clear here for the campus map
  • BIRC Seminar location: Auditorium A, University Hospital, on the University campus
  • Registration: To sign-up for this event, please fill in the registration form and send it by e-mail to Katie Mastrogiacomo (kmast at bwh.harvard.edu) before June 7.

Room Configuration - Fisher Conference Room

24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power.

Preparations

  • Hardware The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.

All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.

  • UPDATE: New version of Slicer to download

Software installation: Please install the Slicer3.6.3-2011-06-07 version appropriate to the laptop computer you'll be bringing to the workshop

Slicer Community

Participants are invited to join the Slicer user and Slicer developer community prior to the workshop, for questions and feature requests related to the software.

For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu).

Slicer3 Training Survey

Click here to take the Slicer3 Training Survey

Registrants

  1. Kamyar Abhari, Biomedical Imaging Research Centre at the University of Western Ontario
  2. Mariam Afshin, UWO
  3. Ali Asadian, UWO
  4. Joseph Awad, Biomedical Imaging Research Centre at the University of Western Ontario
  5. Hamid Azimian, CSTAR, UWO
  6. Mahdi Azizian, CSTAR
  7. Srikanth Bhattad, UWO
  8. Adam Blais, Biomedical Imaging Research Centre at the University of Western Ontario
  9. Susan Buchanan, Biomedical Imaging Research Centre at the University of Western Ontario
  10. Daniel Cho , Biomedical Imaging Research Centre at the University of Western Ontario
  11. Derek Cool, Biomedical Imaging Research Centre at the University of Western Ontario
  12. Stephen Costella, Biomedical Imaging Research Centre at the University of Western Ontario
  13. Andrew Curtis, Biomedical Imaging Research Centre at the University of Western Ontario
  14. Tharindu De Silva, Biomedical Imaging Research Centre at the University of Western Ontario
  15. Ryan Divigalpitiya, UWO/Baines Center for Translational Cancer Research
  16. Maria Drangova, Biomedical Imaging Research Centre at the University of Western Ontario
  17. John Drozd, Biomedical Imaging Research Centre at the University of Western Ontario
  18. Abelardo Escoto, CSTAR
  19. Lori Gardi, UWO
  20. Eli Gibson, Biomedical Imaging Research Centre at the University of Western Ontario
  21. Maged Goubran, Biomedical Imaging Research Centre at the University of Western Ontario
  22. Reza Heydarian, Biomedical Imaging Research Centre at the University of Western Ontario
  23. Samaneh Kazemifar, Biomedical Imaging Research Centre at the University of Western Ontario
  24. Jeff Kempe, LHSC
  25. Iman Khalaji, UWO
  26. Miranda Kirby, Biomedical Imaging Research Centre at the University of Western Ontario
  27. Pencilla Lang, UWO
  28. Fraser Le Ber, CSTAR
  29. Feng Li, Biomedical Imaging Research Centre at the University of Western Ontario
  30. Hao Li, CSTAR
  31. Harry Marshall, LRHI
  32. Lindsay Mathew, Biomedical Imaging Research Centre at the University of Western Ontario
  33. Brandon Miles, UWO
  34. John Moore, Biomedical Imaging Research Centre at the University of Western Ontario
  35. Michael Naish, UWO
  36. Nima Najmaei, UWO
  37. Hamid Neshat, Biomedical Imaging Research Centre at the University of Western Ontario
  38. Haroon Oqab, UWO
  39. Amir Owrangi, Biomedical Imaging Research Centre at the University of Western Ontario
  40. Grace Parraga, UWO
  41. Rajni Patel, UWO
  42. Ivailo Petrov, Biomedical Imaging Research Centre at the University of Western Ontario
  43. Terry Peters, Biomedical Imaging Research Centre at the University of Western Ontario
  44. Bon Ryu, Biomedical Imaging Research Centre at the University of Western Ontario
  45. Brendan Santyr, Biomedical Imaging Research Centre at the University of Western Ontario
  46. Maysam Shahedi, Biomedical Imaging Research Centre at the University of Western Ontario
  47. Arefin Shamsil, UWO
  48. Harish Sharma, UWO
  49. Igor Solovey, Biomedical Imaging Research Centre at the University of Western Ontario
  50. Feng Su, UWO
  51. Sarah Svenningsen, Biomedical Imaging Research Centre at the University of Western Ontario
  52. Ali Tavallaei, Biomedical Imaging Research Centre at the University of Western Ontario
  53. Trevor Thang, UWO
  54. Jian Wang, UWO
  55. Aaron Ward, UWO
  56. Andrew Wheatley, Biomedical Imaging Research Centre at the University of Western Ontario
  57. Ran Xu, CSTAR
  58. Kevin Yang, Biomedical Imaging Research Centre at the University of Western Ontario
  59. Timothy Yeung, UWO
  60. Ali Khan, Robarts Research Institute
  61. Jeremy Gill, Parallax Innovations Inc.
  62. Mehdi Esteghamatian, UWO


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