Events:2011-06-15-Robarts-Slicer-Workshop
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Contents
Introduction
A Slicer tutorial will be hosted by the Biomedical Imaging Research Centre (BIRC) of the University of Western Ontario, London, Canada, on Wednesday, June 15, 2011. The primary objective of this event is to introduce users to the Slicer environment, as well as to illustrate the ability to integrate with ITK and Python modules. The concept of interfacing Slicer with imaging and tracking systems using Open IGTLink will also be discussed. The event will be held in Room MSB 148, Schulich School of Medicine and Dentistry, University of Western Ontario. This course will be followed at 5:30pm by a BIRC Seminar "Open Source Platforms for Collaborative Research - Examples from 3D Slicer" delivered by Dr Ron Kikinis. The seminar will take place in Auditorium A of University Hospital, on the University campus.
Faculty
- Ron Kikinis, M.D., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
- Sonia Pujol, Ph.D., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
- Junichi Tokuda, Ph.D., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
- Danielle Pace, M.ESc, Kitware Inc., Chapel Hill, NC
Local Organizer
- Terry Peters, Ph.D., Biomedical Imaging Research Centre, University of Western Ontario, London, Canada
Agenda
- 8:00-8:25 am Computer setup assistance by the instructors
- 8:25-8:30 am Welcome and presentation of day activities (Ron Kikinis)
- 8:30-9:45 am Hands-on session 1: Data Loading and 3D Visualization (Sonia Pujol)
- 9:45-10:15 am Coffee Break
- 10:15-11:15 am Hands-on session 2: Registration and resampling using Brainsfit: Rigid, Affine and Non-rigid (Danielle Pace)
- 11:15-12:30 Hands-on session 3: White Matter Exploration for Surgical Planning (Sonia Pujol)
- 12:30-13:30 Lunch Break
- 13:30-14:45 Hands-on session 4: Python based modules to Slicer: The Hello Python Programming Tutorial (Sonia Pujol)
- 14:45-15:30 Hands-on session 5: OpenIGTLink: Interfacing Slicer to devices (Junichi Tokuda)
- 15:30-15:45 Coffee Break
- 15.45-16:30 Demonstration of Slicer4 and the Skeletongenerator (Junichi Tokuda)
- 16:15-16:30 Questions from the audience and concluding remarks
- 17:30-19:00 BIRC Lecture: Ron Kikinis, MD: 3D Slicer "Open Source Platforms for Collaborative Research - Examples from 3D Slicer."
Location: Auditorium A, University Hospital.
Logistics
- Date: June 15, 2011
- Workshop Location: Room MSB 148, Schulich School of Medicine and Dentistry, University of Western Ontario Click here for the campus map
- BIRC Seminar location: Auditorium A, University Hospital, on the University campus
- Registration: To sign-up for this event, please fill in the registration form and send it by e-mail to Katie Mastrogiacomo (kmast at bwh.harvard.edu) before June 7.
Room Configuration - Fisher Conference Room
24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power.
Preparations
- Hardware The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.
All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.
- UPDATE: New version of Slicer to download
Software installation: Please install the Slicer3.6.3-2011-06-07 version appropriate to the laptop computer you'll be bringing to the workshop
- Windows: Slicer3-3.6.3-2011-06-07-win32.exe
- Linux 64: Slicer3-3.6.3-2011-06-07-linux-x86_64.tar.gz
- Linux 32: Slicer3-3.6.3-2011-06-07-linux-x86.tar.gz
- Mac Darwin: Slicer3-3.6.3-2011-06-07-darwin-x86.tar.gz
- Datasets and Tutorials:
Slicer Community
Participants are invited to join the Slicer user and Slicer developer community prior to the workshop, for questions and feature requests related to the software.
For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu).
Slicer3 Training Survey
Click here to take the Slicer3 Training Survey
Registrants
- Kamyar Abhari, Biomedical Imaging Research Centre at the University of Western Ontario
- Mariam Afshin, UWO
- Del Archer, Parallax Innovations Inc.
- Ali Asadian, UWO
- Joseph Awad, Biomedical Imaging Research Centre at the University of Western Ontario
- Hamid Azimian, CSTAR, UWO
- Mahdi Azizian, CSTAR
- Srikanth Bhattad, UWO
- Adam Blais, Biomedical Imaging Research Centre at the University of Western Ontario
- Susan Buchanan, Biomedical Imaging Research Centre at the University of Western Ontario
- Daniel Cho , Biomedical Imaging Research Centre at the University of Western Ontario
- Derek Cool, Biomedical Imaging Research Centre at the University of Western Ontario
- Stephen Costella, Biomedical Imaging Research Centre at the University of Western Ontario
- Andrew Curtis, Biomedical Imaging Research Centre at the University of Western Ontario
- Tharindu De Silva, Biomedical Imaging Research Centre at the University of Western Ontario
- Ryan Divigalpitiya, UWO/Baines Center for Translational Cancer Research
- Maria Drangova, Biomedical Imaging Research Centre at the University of Western Ontario
- John Drozd, Biomedical Imaging Research Centre at the University of Western Ontario
- Abelardo Escoto, CSTAR
- Mehdi Esteghamatian, UWO
- Lori Gardi, UWO
- Eli Gibson, Biomedical Imaging Research Centre at the University of Western Ontario
- Jeremy Gill, Parallax Innovations Inc.
- Maged Goubran, Biomedical Imaging Research Centre at the University of Western Ontario
- Reza Heydarian, Biomedical Imaging Research Centre at the University of Western Ontario
- Samaneh Kazemifar, Biomedical Imaging Research Centre at the University of Western Ontario
- Jeff Kempe, LHSC
- Iman Khalaji, UWO
- Ali Khan, Biomedical Imaging Research Centre at the University of Western Ontario
- Miranda Kirby, Biomedical Imaging Research Centre at the University of Western Ontario
- Pencilla Lang, UWO
- Fraser Le Ber, CSTAR
- Feng Li, Biomedical Imaging Research Centre at the University of Western Ontario
- Hao Li, CSTAR
- Harry Marshall, LRHI
- Lindsay Mathew, Biomedical Imaging Research Centre at the University of Western Ontario
- Brandon Miles, UWO
- John Moore, Biomedical Imaging Research Centre at the University of Western Ontario
- Michael Naish, UWO
- Nima Najmaei, UWO
- Hamid Neshat, Biomedical Imaging Research Centre at the University of Western Ontario
- Haroon Oqab, UWO
- Amir Owrangi, Biomedical Imaging Research Centre at the University of Western Ontario
- Grace Parraga, UWO
- Rajni Patel, UWO
- Ivailo Petrov, Biomedical Imaging Research Centre at the University of Western Ontario
- Terry Peters, Biomedical Imaging Research Centre at the University of Western Ontario
- Bon Ryu, Biomedical Imaging Research Centre at the University of Western Ontario
- Brendan Santyr, Biomedical Imaging Research Centre at the University of Western Ontario
- Maysam Shahedi, Biomedical Imaging Research Centre at the University of Western Ontario
- Arefin Shamsil, UWO
- Harish Sharma, UWO
- Igor Solovey, Biomedical Imaging Research Centre at the University of Western Ontario
- Feng Su, UWO
- Sarah Svenningsen, Biomedical Imaging Research Centre at the University of Western Ontario
- Ali Tavallaei, Biomedical Imaging Research Centre at the University of Western Ontario
- Trevor Thang, UWO
- Jian Wang, UWO
- Aaron Ward, UWO
- Andrew Wheatley, Biomedical Imaging Research Centre at the University of Western Ontario
- Ran Xu, CSTAR
- Kevin Yang, Biomedical Imaging Research Centre at the University of Western Ontario
- Timothy Yeung, UWO
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