2011 Summer Project Week Plastimatch for EMSegmenter

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Full Title of Project

Key Investigators

• University of Pennsylvania: Dominique Belhachemi
• University of Pennsylvania: Kilian Pohl
• University of Pennsylvania: Daniel Haehn
• MGH: Greg Sharp

Objective

During the EMSegmenter's pre-processing we have to register our internal atlas to the subject scan. Currently we support two registration tools:
1. BRAINSFit
2. CMTK

We would like to add "plastimatch" to this list.

Approach, Plan

Investigating the commandline interface of plastimatch.
Find the right parameter for our use cases.

Progress

References

http://plastimatch.org/
http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks

Delivery Mechanism

This work will be delivered to the NAMIC Kit as part of the EMSegmenter module.