2012 Winter Project Week:GBMseg
Contents
Key Investigators
- WUSM: Dan Marcus, Misha Milchenko
- Brigham and Women's: Andrey Fedorov, Jan Egger
Objective
We are looking to segment and visualize GBM's from various MR sequences in Slicer, and create an integrated display for clinician review, both radiologist and non-radiologist.
Approach, Plan
The approach is to obtain accurate registration of a number of MR sequences of each tumor case, and analyze correlation with pathology data.
Progress
Delivery Mechanism
GBM MR preprocessing pipeline
References
GrowCut segmentation Slicer documentation: http://wiki.slicer.org/slicerWiki/index.php/Modules:GrowCutSegmentation-Documentation-3.6
V. Vezhnevets and V. Konouchine, "GrowCut - Interactive multi-label N-D image segmentation," in Proc. Graphicon, 2005. pp. 150--156.
Mark Jenkinson, Stephen Smith. "Optimisation in Robust Linear Registration of Brain Images." FMRIB Technical Report TR00MJ2, http://www.fmrib.ox.ac.uk/analysis/techrep/tr00mj2/tr00mj2/
