Iowa-March-20-2012-Slicer-Workshop
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Training Faculty
- Ron Kikinis, M.D., Surgical Planning Laboratory, Harvard Medical School, Boston, MA
- Sonia Pujol, Ph.D., Surgical Planning Laboratory, Harvard Medical School, Boston, MA
- Demian Wasserman, Ph.D., Brigham and Women's Hospital, Boston, MA
- Andrey Fedorov, Ph.D., Surgical Planning Laboratory, Harvard Medical School, Boston, MA
- Hans Johnson, Ph.D., University of Iowa, Iowa City, IA
- Vince Magnotta, Ph.D., University of Iowa, Iowa City, IA
- David Welch, University of Iowa, Iowa City, IA
- Eric Axelson, University of Iowa, Iowa City, IA
- Joy Matsui, University of Iowa, Iowa City, IA
Logistics
- Date: Tuesday March 20th and Wednesday March 21st, 2012
- Location: Information Commons West (2nd floor), Hardin Library, University of Iowa, Iowa City
- 2010 Workshop Flyer
- Slicer version: Slicer 4
- Additional information
Tentative Agenda
| Time | Tuesday, March 20, 2012 | |
| 9:00-9:10 AM | Welcome (Ron Kikinis) | |
| 9:10-9:55 AM | Slicer Basics (Sonia Pujol) | |
| 9:55-10:45 AM | DTI (Demian Wasserman) | |
| 10:45-11:00 AM | Coffee Break | |
| 11:00-12:15 PM | Neurosurgical Workflow (Sonia Pujol) | |
| 12:15-1:30 PM | Lunch | |
| 1:30-3:00 PM | XNAT, Registration (Hans Johnson) | |
| 3:00-3:30 PM | Coffee Break | |
| 3:30-5:00 PM | Quantitative Imaging (Andrey Fedorov) | |
| Time | Wednesday, March 21, 2012 | |
| 09:00-9:45 AM | Developing for Slicer: An Introduction to SEM (Andriy Fedorov/Sonia Pujol) | |
| 9:45-10:15 AM | SimpleITK with Slicer (Hans Johnson) | |
| 10:15-10:30 AM | Coffee Break | |
| 10:30 AM-11:30 PM | Slicer Customization with Scripting (Demian Wasserman/Sonia Pujol) | |
| 11:30-12:00 PM | Concluding Remarks and Feedback | |
| 1:00-5:00 PM | DWI Discussion (Demian Wasserman) (By invitation only) | QIN Discussion (Andriy Fedorov) (By invitation only) |
BWH/Iowa QIN/AIM meeting (March 22)
Items of interest:
- AIM - general overview + discussion (~1 h)
- Discussion of BWH QIN use-case (~30 min)
- Discussion of Iowa QIN use-case - H&N (~1-2 h)
- Discussion of Iowa bioinformatics infrastructure setup: XNAT, databases, application to Iowa use cases (~30 min)
- AIM/Slicer project - overview + discussion: 2D/3D/4D objects, AIM toolkit concept vs. specific use-case implementation, ... (~2h)
- Slicer 4 - module development, GUI design, future directions, development support, etc. (~1-2h; I'm not sure if this will be covered by other presentations and who would be the right person for this)
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