DCBIA meetings
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CPE Lyon Interns 2014-15
Software development
- For Windows: Visual Studio C++, Visual Studio 2008 Express
- For Mac: Xcode, QtCreator
- For Linux: QtCreator
- Support in Michigan: Shawn Rawl, Francois to meet with IT
Training
- Start working on this Training tutorials and excercises
Self-test information
For the test one I wrote and we ran together, it was based on this tutorial: http://www.slicer.org/slicerWiki/images/8/80/WhiteMatterExplorationTutorial_SoniaPujol_2013.pdf linked from: http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Training#Slicer4_Neurosurgical_Planning_Tutorial The self test code: http://viewvc.slicer.org/viewvc.cgi/Slicer4/trunk/Modules/Loadable/Markups/Testing/Python/NeurosurgicalPlanningTutorialMarkupsSelfTest.py?view=log
The application level self tests are in: http://viewvc.slicer.org/viewvc.cgi/Slicer4/trunk/Applications/SlicerApp/Testing/Python/
Instructions on how to create a new self test: http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/SelfTestModule
Organization
- Tuesdays Skype meeting at (maybe) 2pm (starting July 16th)
- Google Hangouts every Tuesday (TBD time)
Projects
- Fiducial selection constrained to surfaces, C++ using VTK and the MRML, already in Slicer3. More to be discussed. FIRST STEP, to download Slicer3 play with fiducials, search in the code where that is done. (Lucie)
- Cropping module, initial stage just a cropping plane. FIRST STEP, Use the clipping model option to get familiar on how it works and being able to gather info from Slicer. (Julia)
Color tables
- Francois developed a little tutorial like document
- Scalar bars (display scalar range) are still 0-100 values in the Model module, but if you go to Colors Module the range is ok
- Lucia's student to try to re-generate research figures Tutorial
Next Meetings
- Not coming to Boston in Sept 2014
- Planing for AADR 2015 in Boston (March)
- Ann Arbor in August for Francois (around August 9th)
- January Salt Lake January 6th to 10th 2015
Meetings Weds June 24th
- Francois: 3dMeshMetric and ModeltoModelCorrespondence. 3dMeshMetric might not be an extension, licensing problems. She uses GPL license (MeshValmet's license). Lab in Michigan uses ModeltoModelCorresponce & ShapePopulationViewer. It doesnt have a problem.
- Francois: Work on the correspondence checkbox in the ModeltoModelDistance module
Progress report
- Personal report
- Updated publications
- Biosketch
- Personal Justification for each subcontract
- PHS 2590 forms
Notes in Francois' notebook
Currents work: James & Guido
- Cross-sectional studies: maybe not meaningful measurements
- Longitudinal studies, not ready yet.
- Think about borrowing ideas from S. Durrleman's [ http://www-sop.inria.fr/asclepios/Publications/Stanley.Durrleman/Durrleman_MICCAI_12.pdf Atlas building work ]
- Deformetrica - [ http://www.deformetrica.org/ Atlas building for shapes ]
