2014 Summer Project Week:Pipeline Visualization

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  Projects List

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  Visualization of pipeline from code

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  BRAINSTools Template pipeline

Key Investigators

• Ramesh Sridharan, Adrian Dalca, Polina Golland, MIT

Project Description

We have developed an extension to nipype (http://nipy.sourceforge.net/nipype/) that allows for visualization of pipelines and their results. At the project week, we plan to improve the visualization and features and release our code.

Live demo (temporary link): http://shoutkey.com/grant

Objective

We plan to show our demo and get feedback to improve the visualization.

Approach, Plan

• Release code / integrate with nipype codebase
• Discuss wishlist for visualization (come see me if you have any thoughts!)

Progress

• Code on github: https://github.com/rameshvs/nipype/tree/visualization-serverhttps://github.com/rameshvs/nipype/tree/visualization-server
• Worked with Dave to visualize Iowa BRAINS pipeline (see screenshot)