BIRN Booth SFN 2005

Move-in Times

• Wednesday Nov 9: 12:00 pm - 4:30 pm
• Thursday Nov 10: 8:00 am - 4:30 pm
• Friday Nov 11: 8:00 am - 6:00 pm

BIRN Booth exhibit times

	Sun-Nov 13	Mon-Nov 14	Tue-Nov 15	Wed-Nov 16
7:00-9:30 am	Daily Setup	Daily Setup	Daily Setup	Daily Setup
9:30-11:30 am	BIRN-CC	BIRN-CC	BIRN-CC	Test Bed: Function
11:30-1:30 pm	Test Bed: Mouse	Test Bed: Function	Test Bed: Morphometry	Test Bed: Mouse
1:30-3:30 pm	Test Bed: Function	Test Bed: Morphometry	Test Bed: Mouse	Test Bed: Morphometry
3:30-5:00 pm	Test Bed: Morphometry	Test Bed: Mouse	Test Bed: Function	BIRN-CC

Demonstration Targets for each testbed

• Morph BIRN
  • Morphometry BIRN presentation
    • Morphometry BIRN: Science & Tool Dissemination
    • Morphometry BIRN: MR Calibration
    • Morphometry BIRN: Analysis, Visualization and Interpretation
  • Public data we'd like to offer through the BIRN Portal:
    • Mbirn: Data Dissemination
  • Software tools we'd like to offer through the BIRN Portal:
    • Mbirn: Software Tools Dissemination

**** Morph BIRN booth support ****
  Sunday 3:30-5pm: Dan Marcus, Tim Olsen, Jorge Jovicich, Anthony Kolasny
  Monday 1:30-3:30pm:  Christine Fennema-Notestine, Jorge Jovicich
  Tuesday 11:30am-1:30pm: Anthony Kolasny, Jorge Jovicich
  Wednesday 1:30-3:30pm:  Christine Fennema-Notestine, Jorge Jovicich
 

• Function BIRN
  • Phase I Datasets and that interface
  • HID/GUI demos
  • QA phantom methods
  • XML schema/usefulness
    • XML-enabled tools
  • E-prime files from Phase I

• Mouse BIRN
  • Tools:
    • A version of a mouse BIRN atlasing environment
    • Pipelines to process and atlas MRI data acquired at CIT or Duke
  • Data collection methodology:
    • MRI
    • Histology
    • Nissl
    • High resolution
  • Data:
    • Data from one of the mouse models of neurological disease: Exact data set TBD
    • Some Gensat data registered to mouse BIRN atlas
    • 3D Mouse Brain data set
    • 3D Paxinos MRI atlas
    • Some microarray/anatomical data
  • Data Management:
    • Developmental ontology
    • Subcellular anatomy ontology
    • Genenetwork Search/get commands
  • Workflows/tutorials/other documentation:
    • Tutorial of how to register Gensat data (or similar) using SmartAtlas
    • Tutorial of how to process 3D MRI volumes (from Caltech and Duke) and register them to the mouse BIRN atlas
    • Document with list of mouse BIRN publications to date

• BIRN CC

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