Difference between revisions of "2008 Winter Project Week Tractography"

From NAMIC Wiki
Jump to: navigation, search
Line 28: Line 28:
 
**3:15  Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or what?  
 
**3:15  Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or what?  
 
**4:00  Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development.  (Ross, CF and Guido to edit this to match today's discussion: excerpt from Guido's email:
 
**4:00  Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development.  (Ross, CF and Guido to edit this to match today's discussion: excerpt from Guido's email:
- Presentation of current status of Slicer 3 DTI infrastructure
+
- Presentation of current status of Slicer 3 DTI infrastructure (Pieper?) [http://www.na-mic.org/Wiki/index.php/Slicer3:DTMRI]
 
- Processing steps necessary for clinical DTI studies
 
- Processing steps necessary for clinical DTI studies
 
- Core-1 modules methods a) recently integrated, b) ready to be integrated, c) in development)
 
- Core-1 modules methods a) recently integrated, b) ready to be integrated, c) in development)

Revision as of 18:39, 18 December 2007

Home < 2008 Winter Project Week Tractography
  • Tractography Validation Beadeker
    • 9:00am: Guido Gerig, Overview of Project goals and progress to date including Santa Fe meeting tractography methods see this page for background
    • 9:15am: Randy Gollub, Morphometry BIRN DTI acquisition and analysis update
    • 9:25am: Randy Gollub, MIND Reliability dataset goals
  • Algorithm specific presentations
    • 9:35 Sonia Pujol (BWH) Streamline Tractography in Slicer 2.7 using ROI and Whole Brain Seeding
    • 9:45 Sylvain Gouttard (Utah) FiberViewer
    • 9:55 Tri Ngo (MIT/BWH) Stochastic Tractography
    • 10:05 John Melonakos (Georgia Tech) Geodesic Tractography Segmentation
    • 10:15 Vince Magnotta (UIowa) GTract
    • 10:25 Ross Whitaker/Tom Fletcher (Utah) Volumetric Connectivity
  • 10:35am: Coffee break
    • 11:00 Casey Goodlett (Utah) DTI Atlas
    • 11:10 Sonia Pujol (BWH) Cross algorithm summary statistics
  • Wrap up from data presentations
    • 11:25 Ross Whitaker to kick-off discussion of Tractography results with summarizing ideas
  • 12:00pm: Lunch
  • 1:30- 3:00 Continue discussion of Tractography results with focus on:
      • Data formats and coordinate system requirements/guidelines/recommendations
      • Quality control methods and implementation
      • ROIs: what works, what doesn't, what to do?
      • registration &/or resampling to support visit 1- visit 2 analysis and group analysis
      • Freesurfer to B0 transform for white matter mask
      • quantification of registration error and its propagation forward and impact on final results
      • plans for data sharing curation and timeline (integration with XNAT project)
      • outcome metrics and how to best frame scientific questions for this project
  • 3pm: coffee break
    • 3:15 Dan Marcus to lead discussion of effort required to post this dataset and results on XNAT Central or XNAT NAMIC or what?
    • 4:00 Guido to lead discussion of "NAMIC software infrastructure for DWI analysis" to clarify what the community expects from a powerful NAMIC DWI Analysis toolkit and identify areas of high priority development. (Ross, CF and Guido to edit this to match today's discussion: excerpt from Guido's email:

- Presentation of current status of Slicer 3 DTI infrastructure (Pieper?) [1] - Processing steps necessary for clinical DTI studies - Core-1 modules methods a) recently integrated, b) ready to be integrated, c) in development)


Back to AHM_2008, Events